Hb_011021_040

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig11021: 47890-58387
Sequence    

Annotation

kegg
ID rcu:RCOM_1719880
description transporter, putative
nr
ID XP_012085100.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
swissprot
ID F4J7S8
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 OS=Arabidopsis thaliana GN=SFH9 PE=2 SV=1
trembl
ID A0A067JR72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17540 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh9-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03182: 48918-54876
cDNA
(Sanger)
(ID:Location)		 027_K06.ab1: 49055-50831 , 040_G04.ab1: 47904-48360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011021_040 0.0 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
2 Hb_007037_020 0.0574358467 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
3 Hb_013399_050 0.0607552358 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
4 Hb_013405_140 0.0806049052 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
5 Hb_000175_030 0.0820512601 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
6 Hb_002016_080 0.0858721181 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_001172_120 0.0887009988 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
8 Hb_011485_020 0.0892489349 - - protein with unknown function [Ricinus communis]
9 Hb_000673_020 0.093956199 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
10 Hb_007192_100 0.0951774713 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
11 Hb_000424_200 0.0967743181 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
12 Hb_003880_030 0.099725817 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_000327_060 0.1017561637 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
14 Hb_003783_030 0.1023547989 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
15 Hb_158445_010 0.1043717865 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
16 Hb_000436_030 0.1057959308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000733_180 0.1061688205 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
18 Hb_002284_200 0.107581727 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
19 Hb_000111_450 0.1100069926 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
20 Hb_002304_160 0.1100906875 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011021_040 Hb_011021_040 Hb_007037_020 Hb_007037_020 Hb_011021_040--Hb_007037_020 Hb_013399_050 Hb_013399_050 Hb_011021_040--Hb_013399_050 Hb_013405_140 Hb_013405_140 Hb_011021_040--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_002016_080 Hb_002016_080 Hb_011021_040--Hb_002016_080 Hb_001172_120 Hb_001172_120 Hb_011021_040--Hb_001172_120 Hb_007037_020--Hb_013405_140 Hb_007037_020--Hb_001172_120 Hb_007037_020--Hb_013399_050 Hb_007037_020--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_007037_020--Hb_011485_020 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_013405_140--Hb_002016_080 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_000175_030--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_003880_030 Hb_003880_030 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_007192_100 Hb_007192_100 Hb_000175_030--Hb_007192_100 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_002016_080--Hb_003783_030 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_001172_120--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92497 5.43959 6.0799 7.29626 2.20283 2.60846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9582 17.124 15.6318 5.01684 7.05688

CAGE analysis