Hb_011021_050

Information

Type -
Description -
Location Contig11021: 63473-77753
Sequence    

Annotation

kegg
ID rcu:RCOM_1719760
description DNA binding protein, putative
nr
ID XP_012085097.1
description PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
swissprot
ID F4J7T3
description Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana GN=EAF1A PE=1 SV=1
trembl
ID A0A067JQZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17539 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03186: 63530-71564 , PASA_asmbl_03188: 73542-74184 , PASA_asmbl_03189: 74394-75882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011021_050 0.0 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
2 Hb_004306_120 0.0629295699 - - DNA binding protein, putative [Ricinus communis]
3 Hb_005408_030 0.0638497963 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
4 Hb_002609_080 0.0645964104 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
5 Hb_000009_410 0.0710450394 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
6 Hb_000656_060 0.0713253238 - - DNA binding protein, putative [Ricinus communis]
7 Hb_005186_040 0.0763666646 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
8 Hb_000856_070 0.0791786515 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
9 Hb_000928_090 0.0800998777 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
10 Hb_004204_010 0.0823838113 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
11 Hb_012244_020 0.0848304642 - - calpain, putative [Ricinus communis]
12 Hb_006531_020 0.0850211625 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
13 Hb_007012_040 0.086296563 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
14 Hb_000154_130 0.0863656799 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
15 Hb_001648_020 0.0867777065 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
16 Hb_003849_280 0.0882241677 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
17 Hb_002805_210 0.0897618632 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
18 Hb_001726_100 0.0906992995 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
19 Hb_004705_020 0.0910506662 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
20 Hb_006031_010 0.092576413 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_011021_050 Hb_011021_050 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_004306_120--Hb_002609_080 Hb_003849_280 Hb_003849_280 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_005408_030--Hb_000009_410 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005408_030--Hb_005186_040 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_006531_020 Hb_006531_020 Hb_000009_410--Hb_006531_020 Hb_000009_410--Hb_000934_210 Hb_000009_410--Hb_001951_170 Hb_006031_010 Hb_006031_010 Hb_000009_410--Hb_006031_010 Hb_000656_060--Hb_005186_040 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_005186_040--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5799 9.68049 3.31298 3.74677 2.73801 3.08614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0194 3.09875 3.22075 6.33223 8.90148

CAGE analysis