Hb_011030_020

Information

Type -
Description -
Location Contig11030: 24542-26389
Sequence    

Annotation

kegg
ID rcu:RCOM_0739730
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092576.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
swissprot
ID Q9SKQ4
description Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
trembl
ID B9SQL4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0739730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03212: 25029-25390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011030_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
2 Hb_005162_070 0.0780667562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001189_050 0.0793248264 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
4 Hb_010608_050 0.0803097635 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
5 Hb_002205_130 0.0869291643 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
6 Hb_008695_100 0.0897883011 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
7 Hb_000617_150 0.0901886429 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
8 Hb_004607_030 0.0931553365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
9 Hb_001454_190 0.0941252591 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
10 Hb_000019_060 0.0953374994 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
11 Hb_025557_030 0.0987702386 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
12 Hb_002027_040 0.0987938787 - - synapse-associated protein, putative [Ricinus communis]
13 Hb_000366_090 0.0999943855 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
14 Hb_000260_570 0.1018048308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004785_140 0.1022956336 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
16 Hb_000327_220 0.1040293681 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
17 Hb_000236_140 0.1040734237 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
18 Hb_019263_020 0.1057114183 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
19 Hb_001493_180 0.1063835295 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
20 Hb_168319_030 0.1066978724 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_011030_020 Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_005162_070--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001357_010 Hb_001357_010 Hb_001189_050--Hb_001357_010 Hb_010608_050--Hb_008695_100 Hb_004607_030 Hb_004607_030 Hb_010608_050--Hb_004607_030 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_012799_100 Hb_012799_100 Hb_002205_130--Hb_012799_100 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002205_130--Hb_002027_040 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78336 3.85426 1.74853 2.53927 2.91768 3.68519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32358 8.51298 16.0339 3.93771 3.67937

CAGE analysis