Hb_011037_010

Information

Type -
Description -
Location Contig11037: 14152-15368
Sequence    

Annotation

kegg
ID pxb:103944599
description DNA-binding protein HEXBP-like
nr
ID XP_012458185.1
description PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MRU6
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_26972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011037_010 0.0 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
2 Hb_003058_050 0.0011854453 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_002099_020 0.0029782716 - - cysteine proteinase inhibitor-like [Jatropha curcas]
4 Hb_000205_170 0.0490425574 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
5 Hb_092027_010 0.0972149824 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
6 Hb_076693_010 0.0978223312 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
7 Hb_011707_010 0.0980153044 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_001135_230 0.1366048271 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
9 Hb_008031_020 0.1400051601 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_001831_020 0.1405124668 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_000058_220 0.1414693322 - - hypothetical protein, partial [Staphylococcus aureus]
12 Hb_019677_010 0.1417911341 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_048125_010 0.1451707388 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
14 Hb_012522_020 0.1478832274 - - -
15 Hb_007713_020 0.2051087241 - - -
16 Hb_022212_010 0.2630083256 - - -
17 Hb_000345_470 0.2806630836 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
18 Hb_001437_290 0.2910525834 - - -
19 Hb_004297_060 0.3137012417 - - Cucumisin protein [Theobroma cacao]
20 Hb_003371_240 0.3223357783 - - hypothetical protein JCGZ_16702 [Jatropha curcas]

Gene co-expression network

sample Hb_011037_010 Hb_011037_010 Hb_003058_050 Hb_003058_050 Hb_011037_010--Hb_003058_050 Hb_002099_020 Hb_002099_020 Hb_011037_010--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_011037_010--Hb_000205_170 Hb_092027_010 Hb_092027_010 Hb_011037_010--Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_011037_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_011037_010--Hb_011707_010 Hb_003058_050--Hb_002099_020 Hb_003058_050--Hb_000205_170 Hb_003058_050--Hb_092027_010 Hb_003058_050--Hb_076693_010 Hb_003058_050--Hb_011707_010 Hb_002099_020--Hb_000205_170 Hb_002099_020--Hb_092027_010 Hb_002099_020--Hb_076693_010 Hb_002099_020--Hb_011707_010 Hb_001135_230 Hb_001135_230 Hb_000205_170--Hb_001135_230 Hb_000205_170--Hb_092027_010 Hb_000205_170--Hb_076693_010 Hb_092027_010--Hb_076693_010 Hb_092027_010--Hb_011707_010 Hb_008031_020 Hb_008031_020 Hb_092027_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_092027_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_092027_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_092027_010--Hb_019677_010 Hb_076693_010--Hb_011707_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_076693_010--Hb_000058_220 Hb_076693_010--Hb_019677_010 Hb_011707_010--Hb_008031_020 Hb_011707_010--Hb_001831_020 Hb_011707_010--Hb_000058_220 Hb_011707_010--Hb_019677_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.041692 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0477054 0 0 0 0

CAGE analysis