Hb_011053_020

Information

Type -
Description -
Location Contig11053: 23775-24449
Sequence    

Annotation

kegg
ID rcu:RCOM_1454610
description lipoic acid synthetase, putative
nr
ID XP_002513160.1
description lipoic acid synthetase, putative [Ricinus communis]
swissprot
ID P80680
description Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1
trembl
ID B9RGK8
description Lipoic acid synthetase, putative OS=Ricinus communis GN=RCOM_1454610 PE=4 SV=1
Gene Ontology
ID GO:0016992
description ferredoxin-thioredoxin variable chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03314: 21697-24508 , PASA_asmbl_03315: 23383-24502
cDNA
(Sanger)
(ID:Location)		 013_L12.ab1: 22036-24473 , 019_F14.ab1: 23808-24508 , 044_D20.ab1: 22092-24508 , 049_A18.ab1: 22030-24473

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011053_020 0.0 - - lipoic acid synthetase, putative [Ricinus communis]
2 Hb_183963_010 0.0949852709 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
3 Hb_007002_010 0.1155771459 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
4 Hb_000012_010 0.1186790858 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
5 Hb_000023_210 0.1190503025 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
6 Hb_000866_050 0.1259154777 - - phosphate transporter [Manihot esculenta]
7 Hb_000189_520 0.1306555933 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
8 Hb_000473_060 0.1350466363 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
9 Hb_001369_700 0.1359890749 - - -
10 Hb_031330_020 0.1377387586 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_011053_030 0.1496053325 - - -
12 Hb_026314_030 0.1506831217 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
13 Hb_000890_110 0.15185385 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
14 Hb_000352_220 0.1527380608 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_000495_080 0.1534636594 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
16 Hb_002894_090 0.1537081632 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
17 Hb_000683_080 0.1549857388 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
18 Hb_063866_010 0.1551534531 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
19 Hb_000300_680 0.1616010982 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
20 Hb_019613_010 0.1618329572 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011053_020 Hb_011053_020 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_183963_010--Hb_000023_210 Hb_000352_220 Hb_000352_220 Hb_007002_010--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_007002_010--Hb_000023_210 Hb_002304_180 Hb_002304_180 Hb_000012_010--Hb_002304_180 Hb_000012_010--Hb_000189_520 Hb_000012_010--Hb_000023_210 Hb_000667_140 Hb_000667_140 Hb_000012_010--Hb_000667_140 Hb_000012_010--Hb_000866_050 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_000023_210--Hb_002304_180 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_011053_030 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_000189_520--Hb_003935_080 Hb_000189_520--Hb_011053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.99044 17.417 49.0811 102.243 9.14628 11.1716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3072 30.6517 48.1582 26.4295 345.318

CAGE analysis