Hb_011063_020

Information

Type -
Description -
Location Contig11063: 2438-3737
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12760g
description POPTRDRAFT_1102514; hypothetical protein
nr
ID XP_012065348.1
description PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q5RCE6
description Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2
trembl
ID A0A067L5R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribosomal l1 domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011063_020 0.0 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
2 Hb_003688_170 0.1528097837 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
3 Hb_000160_030 0.2007788297 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
4 Hb_000590_030 0.2240227877 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024404_010 0.2497619175 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
6 Hb_000251_090 0.2744204322 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
7 Hb_002139_010 0.2834934156 - - -
8 Hb_138652_010 0.2835363298 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
9 Hb_000590_040 0.2932933037 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
10 Hb_003688_160 0.2958199458 - - Presenilin-like family protein [Populus trichocarpa]
11 Hb_002289_130 0.2993852281 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
12 Hb_027028_030 0.3001683927 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000331_150 0.3005560953 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_127003_010 0.3017089839 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
15 Hb_000116_300 0.302815677 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_005211_160 0.3031383172 - - Protein PNS1, putative [Ricinus communis]
17 Hb_085863_020 0.305529905 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
18 Hb_003540_130 0.306899024 - - -
19 Hb_004103_030 0.3076608754 - - conserved hypothetical protein [Ricinus communis]
20 Hb_170193_010 0.3092287834 - - JHL25H03.10 [Jatropha curcas]

Gene co-expression network

sample Hb_011063_020 Hb_011063_020 Hb_003688_170 Hb_003688_170 Hb_011063_020--Hb_003688_170 Hb_000160_030 Hb_000160_030 Hb_011063_020--Hb_000160_030 Hb_000590_030 Hb_000590_030 Hb_011063_020--Hb_000590_030 Hb_024404_010 Hb_024404_010 Hb_011063_020--Hb_024404_010 Hb_000251_090 Hb_000251_090 Hb_011063_020--Hb_000251_090 Hb_002139_010 Hb_002139_010 Hb_011063_020--Hb_002139_010 Hb_003688_160 Hb_003688_160 Hb_003688_170--Hb_003688_160 Hb_003688_170--Hb_000251_090 Hb_001242_090 Hb_001242_090 Hb_003688_170--Hb_001242_090 Hb_003688_170--Hb_000160_030 Hb_003688_170--Hb_024404_010 Hb_000160_030--Hb_000590_030 Hb_011639_060 Hb_011639_060 Hb_000160_030--Hb_011639_060 Hb_000392_390 Hb_000392_390 Hb_000160_030--Hb_000392_390 Hb_000160_030--Hb_002139_010 Hb_000099_220 Hb_000099_220 Hb_000590_030--Hb_000099_220 Hb_000590_030--Hb_024404_010 Hb_002450_110 Hb_002450_110 Hb_000590_030--Hb_002450_110 Hb_003768_040 Hb_003768_040 Hb_000590_030--Hb_003768_040 Hb_104812_010 Hb_104812_010 Hb_024404_010--Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_024404_010--Hb_007333_030 Hb_135611_010 Hb_135611_010 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_002139_010--Hb_011639_060 Hb_002139_010--Hb_000392_390 Hb_046440_010 Hb_046440_010 Hb_002139_010--Hb_046440_010 Hb_003752_050 Hb_003752_050 Hb_002139_010--Hb_003752_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5622 1.48862 0.876397 2.8917 14.734 1.70517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389871 0.383301 33.4389 8.25591 2.04328

CAGE analysis