Hb_011063_060

Information

Type -
Description -
Location Contig11063: 29750-31002
Sequence    

Annotation

kegg
ID tcc:TCM_000095
description Basic chitinase
nr
ID XP_012065354.1
description PREDICTED: endochitinase-like [Jatropha curcas]
swissprot
ID P36907
description Endochitinase OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067L5S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22364 PE=4 SV=1
Gene Ontology
ID GO:0004568
description class i chitinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03338: 29683-31021
cDNA
(Sanger)
(ID:Location)		 004_K21.ab1: 30030-31021 , 017_I07.ab1: 30116-31021 , 034_N05.ab1: 30012-31021 , 036_N21.ab1: 30022-31021

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011063_060 0.0 - - PREDICTED: endochitinase-like [Jatropha curcas]
2 Hb_001660_040 0.1164005826 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_008225_080 0.121191116 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
4 Hb_010334_040 0.1229938479 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
5 Hb_000288_140 0.1245593187 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
6 Hb_000025_740 0.1265938838 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_005010_040 0.1285422651 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
8 Hb_031042_030 0.1329544784 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
9 Hb_000005_350 0.134461909 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
10 Hb_000010_200 0.1366153825 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_007875_070 0.1377736654 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
12 Hb_012553_020 0.1408132195 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
13 Hb_000589_100 0.1411707309 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_005237_040 0.1429348632 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
15 Hb_012796_050 0.1436231317 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
16 Hb_005116_010 0.1441404802 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
17 Hb_014037_010 0.1449228745 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
18 Hb_002686_390 0.1450186512 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
19 Hb_000984_080 0.1486257777 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_001024_030 0.1490767692 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011063_060 Hb_011063_060 Hb_001660_040 Hb_001660_040 Hb_011063_060--Hb_001660_040 Hb_008225_080 Hb_008225_080 Hb_011063_060--Hb_008225_080 Hb_010334_040 Hb_010334_040 Hb_011063_060--Hb_010334_040 Hb_000288_140 Hb_000288_140 Hb_011063_060--Hb_000288_140 Hb_000025_740 Hb_000025_740 Hb_011063_060--Hb_000025_740 Hb_005010_040 Hb_005010_040 Hb_011063_060--Hb_005010_040 Hb_001660_040--Hb_000288_140 Hb_000005_350 Hb_000005_350 Hb_001660_040--Hb_000005_350 Hb_001660_040--Hb_010334_040 Hb_005211_090 Hb_005211_090 Hb_001660_040--Hb_005211_090 Hb_001660_040--Hb_000025_740 Hb_011861_020 Hb_011861_020 Hb_001660_040--Hb_011861_020 Hb_000758_030 Hb_000758_030 Hb_008225_080--Hb_000758_030 Hb_007875_070 Hb_007875_070 Hb_008225_080--Hb_007875_070 Hb_000976_020 Hb_000976_020 Hb_008225_080--Hb_000976_020 Hb_000984_080 Hb_000984_080 Hb_008225_080--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_008225_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_008225_080--Hb_006006_070 Hb_010334_040--Hb_000005_350 Hb_005116_010 Hb_005116_010 Hb_010334_040--Hb_005116_010 Hb_010334_040--Hb_000025_740 Hb_000684_490 Hb_000684_490 Hb_010334_040--Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_010334_040--Hb_000471_010 Hb_010334_040--Hb_005010_040 Hb_001609_080 Hb_001609_080 Hb_000288_140--Hb_001609_080 Hb_058526_010 Hb_058526_010 Hb_000288_140--Hb_058526_010 Hb_000288_140--Hb_000005_350 Hb_003166_040 Hb_003166_040 Hb_000288_140--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_000288_140--Hb_127743_030 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_000025_740--Hb_000005_350 Hb_001104_210 Hb_001104_210 Hb_000025_740--Hb_001104_210 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_005010_040--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210162 6.15313 4.43386 3.69101 0 0.0229091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.481002 0.0756642 0.349115 28.9996 2.17344

CAGE analysis