Hb_011081_040

Information

Type -
Description -
Location Contig11081: 19778-20459
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41430g
description hypothetical protein
nr
ID KDP27021.1
description hypothetical protein JCGZ_20956 [Jatropha curcas]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID A0A067JST6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20956 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated protein 1-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011081_040 0.0 - - hypothetical protein JCGZ_20956 [Jatropha curcas]
2 Hb_011540_030 0.2774983636 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
3 Hb_001141_290 0.3029565749 - - -
4 Hb_094890_010 0.3254545935 - - -
5 Hb_134708_010 0.3266962943 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
6 Hb_000427_070 0.331058202 - - -
7 Hb_067793_010 0.343794836 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
8 Hb_003055_150 0.3502337358 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_115053_010 0.3614806167 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_014720_090 0.3621226774 - - -
11 Hb_004970_210 0.3638225486 - - -
12 Hb_001268_090 0.3702776532 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
13 Hb_025075_010 0.3728754214 - - 50S ribosomal protein L24 [Glycine soja]
14 Hb_000240_100 0.3735537457 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
15 Hb_011512_050 0.3768724115 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
16 Hb_007021_010 0.3849920209 transcription factor TF Family: B3 hypothetical protein RCOM_0939100 [Ricinus communis]
17 Hb_000943_020 0.3854431631 - - 60S ribosomal protein L30, putative [Ricinus communis]
18 Hb_000832_210 0.3935629498 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
19 Hb_003680_190 0.3936853046 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
20 Hb_001516_020 0.394000886 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011081_040 Hb_011081_040 Hb_011540_030 Hb_011540_030 Hb_011081_040--Hb_011540_030 Hb_001141_290 Hb_001141_290 Hb_011081_040--Hb_001141_290 Hb_094890_010 Hb_094890_010 Hb_011081_040--Hb_094890_010 Hb_134708_010 Hb_134708_010 Hb_011081_040--Hb_134708_010 Hb_000427_070 Hb_000427_070 Hb_011081_040--Hb_000427_070 Hb_067793_010 Hb_067793_010 Hb_011081_040--Hb_067793_010 Hb_002609_250 Hb_002609_250 Hb_011540_030--Hb_002609_250 Hb_001247_190 Hb_001247_190 Hb_011540_030--Hb_001247_190 Hb_011512_050 Hb_011512_050 Hb_011540_030--Hb_011512_050 Hb_000240_120 Hb_000240_120 Hb_011540_030--Hb_000240_120 Hb_000028_260 Hb_000028_260 Hb_011540_030--Hb_000028_260 Hb_014720_090 Hb_014720_090 Hb_001141_290--Hb_014720_090 Hb_000866_250 Hb_000866_250 Hb_001141_290--Hb_000866_250 Hb_001141_290--Hb_094890_010 Hb_003055_150 Hb_003055_150 Hb_001141_290--Hb_003055_150 Hb_001080_010 Hb_001080_010 Hb_001141_290--Hb_001080_010 Hb_094890_010--Hb_003055_150 Hb_000500_120 Hb_000500_120 Hb_094890_010--Hb_000500_120 Hb_094890_010--Hb_014720_090 Hb_080749_010 Hb_080749_010 Hb_094890_010--Hb_080749_010 Hb_006162_060 Hb_006162_060 Hb_134708_010--Hb_006162_060 Hb_001235_050 Hb_001235_050 Hb_134708_010--Hb_001235_050 Hb_000832_210 Hb_000832_210 Hb_134708_010--Hb_000832_210 Hb_004970_210 Hb_004970_210 Hb_134708_010--Hb_004970_210 Hb_001089_080 Hb_001089_080 Hb_134708_010--Hb_001089_080 Hb_000943_020 Hb_000943_020 Hb_000427_070--Hb_000943_020 Hb_053971_010 Hb_053971_010 Hb_000427_070--Hb_053971_010 Hb_000427_070--Hb_001247_190 Hb_009780_070 Hb_009780_070 Hb_000427_070--Hb_009780_070 Hb_024937_020 Hb_024937_020 Hb_000427_070--Hb_024937_020 Hb_000342_160 Hb_000342_160 Hb_000427_070--Hb_000342_160 Hb_003032_100 Hb_003032_100 Hb_067793_010--Hb_003032_100 Hb_000010_410 Hb_000010_410 Hb_067793_010--Hb_000010_410 Hb_005671_020 Hb_005671_020 Hb_067793_010--Hb_005671_020 Hb_003333_050 Hb_003333_050 Hb_067793_010--Hb_003333_050 Hb_002272_280 Hb_002272_280 Hb_067793_010--Hb_002272_280 Hb_001208_010 Hb_001208_010 Hb_067793_010--Hb_001208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.976611 0 0.461022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.439035 1.29498 0.0914716 0

CAGE analysis