Hb_011099_010

Information

Type -
Description -
Location Contig11099: 16221-20891
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011099_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_005965_020 0.1843602624 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002936_020 0.2322779463 - - hypothetical protein VITISV_001748 [Vitis vinifera]
4 Hb_001754_160 0.2346180761 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
5 Hb_003266_070 0.2472600609 - - -
6 Hb_000031_330 0.2481871679 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
7 Hb_002289_140 0.2499177051 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000116_200 0.2567232796 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
9 Hb_002067_130 0.2617457432 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
10 Hb_002918_130 0.2639370206 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
11 Hb_001195_210 0.2652692069 - - -
12 Hb_003643_030 0.2652973898 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
13 Hb_001269_250 0.266359489 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
14 Hb_000953_080 0.267864205 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
15 Hb_000567_180 0.2689096056 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
16 Hb_000112_100 0.2707943837 - - glutamate receptor 2 plant, putative [Ricinus communis]
17 Hb_010921_040 0.2821067109 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
18 Hb_002571_040 0.2836805012 - - hypothetical protein RCOM_1321060 [Ricinus communis]
19 Hb_000110_380 0.2846332856 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
20 Hb_004724_450 0.291328015 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011099_010 Hb_011099_010 Hb_005965_020 Hb_005965_020 Hb_011099_010--Hb_005965_020 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_001754_160 Hb_001754_160 Hb_011099_010--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_011099_010--Hb_003266_070 Hb_000031_330 Hb_000031_330 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_002571_040 Hb_002571_040 Hb_005965_020--Hb_002571_040 Hb_154600_010 Hb_154600_010 Hb_005965_020--Hb_154600_010 Hb_005965_020--Hb_000031_330 Hb_001269_250 Hb_001269_250 Hb_005965_020--Hb_001269_250 Hb_002602_030 Hb_002602_030 Hb_005965_020--Hb_002602_030 Hb_004319_100 Hb_004319_100 Hb_002936_020--Hb_004319_100 Hb_002894_070 Hb_002894_070 Hb_002936_020--Hb_002894_070 Hb_000616_100 Hb_000616_100 Hb_002936_020--Hb_000616_100 Hb_159012_010 Hb_159012_010 Hb_002936_020--Hb_159012_010 Hb_000194_030 Hb_000194_030 Hb_002936_020--Hb_000194_030 Hb_001529_010 Hb_001529_010 Hb_002936_020--Hb_001529_010 Hb_003643_030 Hb_003643_030 Hb_001754_160--Hb_003643_030 Hb_000896_070 Hb_000896_070 Hb_001754_160--Hb_000896_070 Hb_001754_160--Hb_003266_070 Hb_000116_200 Hb_000116_200 Hb_001754_160--Hb_000116_200 Hb_001195_210 Hb_001195_210 Hb_001754_160--Hb_001195_210 Hb_003266_070--Hb_003643_030 Hb_000087_090 Hb_000087_090 Hb_003266_070--Hb_000087_090 Hb_001143_150 Hb_001143_150 Hb_003266_070--Hb_001143_150 Hb_160246_010 Hb_160246_010 Hb_003266_070--Hb_160246_010 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_000031_330--Hb_001195_210 Hb_000953_080 Hb_000953_080 Hb_000031_330--Hb_000953_080 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000031_330--Hb_000116_200 Hb_000946_070 Hb_000946_070 Hb_002289_140--Hb_000946_070 Hb_029510_120 Hb_029510_120 Hb_002289_140--Hb_029510_120 Hb_000003_110 Hb_000003_110 Hb_002289_140--Hb_000003_110 Hb_001616_100 Hb_001616_100 Hb_002289_140--Hb_001616_100 Hb_000015_190 Hb_000015_190 Hb_002289_140--Hb_000015_190 Hb_000017_250 Hb_000017_250 Hb_002289_140--Hb_000017_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00393312 0.00372254 0.0206217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00852999 0 0.00675703 0

CAGE analysis