Hb_011104_020

Information

Type -
Description -
Location Contig11104: 17083-30043
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09320g
description POPTRDRAFT_757195; P-glycoprotein
nr
ID XP_012073988.1
description PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
swissprot
ID Q8LPK2
description ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3
trembl
ID B9GZA0
description P-glycoprotein OS=Populus trichocarpa GN=POPTR_0003s09320g PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03435: 17068-19665 , PASA_asmbl_03437: 20510-21327 , PASA_asmbl_03438: 21389-29710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011104_020 0.0 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
2 Hb_002073_150 0.0489993042 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_000483_430 0.0527526795 - - -
4 Hb_001321_010 0.0589406697 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
5 Hb_000270_090 0.0629571475 - - nitrate transporter, putative [Ricinus communis]
6 Hb_004994_030 0.0660190913 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_012389_010 0.0683530853 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
8 Hb_002407_090 0.0743672316 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
9 Hb_001248_070 0.0752906354 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
10 Hb_000608_290 0.0840668812 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_007718_030 0.0884251084 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_000968_010 0.0900983592 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
13 Hb_001051_010 0.0910004823 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
14 Hb_000140_460 0.0931850892 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
15 Hb_000675_010 0.0980443762 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
16 Hb_018591_020 0.098527308 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_000023_130 0.0991225142 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
18 Hb_096224_050 0.0995533596 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
19 Hb_000705_010 0.1002698424 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
20 Hb_000373_010 0.1006702304 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011104_020 Hb_011104_020 Hb_002073_150 Hb_002073_150 Hb_011104_020--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_011104_020--Hb_000483_430 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_011104_020--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_011104_020--Hb_004994_030 Hb_012389_010 Hb_012389_010 Hb_011104_020--Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_131876_010 Hb_131876_010 Hb_002073_150--Hb_131876_010 Hb_002073_150--Hb_000483_430 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_000483_430--Hb_012389_010 Hb_000041_210 Hb_000041_210 Hb_000483_430--Hb_000041_210 Hb_000483_430--Hb_004994_030 Hb_000023_130 Hb_000023_130 Hb_000483_430--Hb_000023_130 Hb_001321_010--Hb_000270_090 Hb_001321_010--Hb_004994_030 Hb_002007_220 Hb_002007_220 Hb_001321_010--Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_001321_010--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_001321_010--Hb_002407_090 Hb_000270_090--Hb_004994_030 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_000270_090--Hb_002007_220 Hb_000270_090--Hb_002407_090 Hb_003937_010 Hb_003937_010 Hb_004994_030--Hb_003937_010 Hb_004994_030--Hb_012389_010 Hb_004994_030--Hb_002073_150 Hb_012389_010--Hb_000041_210 Hb_012389_010--Hb_131876_010 Hb_000675_010 Hb_000675_010 Hb_012389_010--Hb_000675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0056947 5.83778 21.6177 10.5331 0 0.00839074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0104386 0 0.0157843 3.57855 32.9177

CAGE analysis