Hb_011108_010

Information

Type -
Description -
Location Contig11108: 6841-14306
Sequence    

Annotation

kegg
ID pmum:103335582
description uncharacterized LOC103335582
nr
ID XP_008236815.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
swissprot
ID Q9FJF9
description Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1
trembl
ID A0A061E6C6
description SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011108_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
2 Hb_135887_010 0.0276943287 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_005991_030 0.0312521961 - - copper ion binding protein, putative [Ricinus communis]
4 Hb_005228_050 0.0338269344 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
5 Hb_000724_040 0.0382665472 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
6 Hb_003786_030 0.0423773713 - - BnaUnng00830D [Brassica napus]
7 Hb_099263_010 0.0452465505 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
8 Hb_002973_060 0.0616273353 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000540_080 0.0725629527 - - PREDICTED: laccase-17 [Jatropha curcas]
10 Hb_000023_100 0.0764932259 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
11 Hb_045260_010 0.0810043479 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
12 Hb_000580_200 0.0835112267 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
13 Hb_023342_010 0.0860858291 - - -
14 Hb_000115_030 0.0873657766 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
15 Hb_034299_010 0.0899653376 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_151290_010 0.0905400513 - - unnamed protein product [Vitis vinifera]
17 Hb_002960_180 0.091905021 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
18 Hb_104014_020 0.0920068065 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
19 Hb_000007_290 0.0931362425 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
20 Hb_002010_040 0.0946316353 - - -

Gene co-expression network

sample Hb_011108_010 Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_011108_010--Hb_135887_010 Hb_005991_030 Hb_005991_030 Hb_011108_010--Hb_005991_030 Hb_005228_050 Hb_005228_050 Hb_011108_010--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_011108_010--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_011108_010--Hb_003786_030 Hb_099263_010 Hb_099263_010 Hb_011108_010--Hb_099263_010 Hb_135887_010--Hb_003786_030 Hb_135887_010--Hb_000724_040 Hb_135887_010--Hb_005228_050 Hb_135887_010--Hb_005991_030 Hb_000580_200 Hb_000580_200 Hb_135887_010--Hb_000580_200 Hb_005991_030--Hb_099263_010 Hb_005991_030--Hb_005228_050 Hb_002960_180 Hb_002960_180 Hb_005991_030--Hb_002960_180 Hb_005991_030--Hb_000724_040 Hb_005228_050--Hb_000724_040 Hb_005228_050--Hb_003786_030 Hb_002973_060 Hb_002973_060 Hb_005228_050--Hb_002973_060 Hb_000540_080 Hb_000540_080 Hb_005228_050--Hb_000540_080 Hb_000724_040--Hb_002973_060 Hb_000724_040--Hb_003786_030 Hb_000115_030 Hb_000115_030 Hb_000724_040--Hb_000115_030 Hb_003786_030--Hb_002973_060 Hb_104014_020 Hb_104014_020 Hb_003786_030--Hb_104014_020 Hb_000007_290 Hb_000007_290 Hb_099263_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010 Hb_099263_010--Hb_002960_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00954125 0.0475511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0963854

CAGE analysis