Hb_011111_010

Information

Type -
Description -
Location Contig11111: 5372-5827
Sequence    

Annotation

kegg
ID vvi:104882254
description putative RING-H2 finger protein ATL21B
nr
ID XP_012066190.1
description PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
swissprot
ID P0CH03
description Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV=1
trembl
ID A0A067L346
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23769 PE=4 SV=1
Gene Ontology
ID GO:0005488
description receptor serine threonine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011111_010 0.0 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
2 Hb_143232_020 0.0406957483 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
3 Hb_093204_010 0.0578326271 - - conserved hypothetical protein [Ricinus communis]
4 Hb_073423_010 0.06148554 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004117_360 0.067486555 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
6 Hb_002486_030 0.0683106971 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
7 Hb_008579_010 0.0766375025 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
8 Hb_001623_020 0.077729019 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
9 Hb_004994_070 0.0822924736 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
10 Hb_012691_040 0.0847695715 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_001514_110 0.0852664839 - - conserved hypothetical protein [Ricinus communis]
12 Hb_142691_010 0.087383955 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_104855_020 0.0898087824 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_111908_010 0.0919010044 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000959_290 0.0943590208 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_000333_150 0.0973811037 - - hypothetical protein RCOM_0711500 [Ricinus communis]
17 Hb_002572_060 0.1000464318 - - conserved hypothetical protein [Ricinus communis]
18 Hb_147137_020 0.1026935401 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
19 Hb_000256_050 0.1088456099 - - chitinase, putative [Ricinus communis]
20 Hb_006519_010 0.1094448534 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]

Gene co-expression network

sample Hb_011111_010 Hb_011111_010 Hb_143232_020 Hb_143232_020 Hb_011111_010--Hb_143232_020 Hb_093204_010 Hb_093204_010 Hb_011111_010--Hb_093204_010 Hb_073423_010 Hb_073423_010 Hb_011111_010--Hb_073423_010 Hb_004117_360 Hb_004117_360 Hb_011111_010--Hb_004117_360 Hb_002486_030 Hb_002486_030 Hb_011111_010--Hb_002486_030 Hb_008579_010 Hb_008579_010 Hb_011111_010--Hb_008579_010 Hb_143232_020--Hb_073423_010 Hb_143232_020--Hb_002486_030 Hb_143232_020--Hb_008579_010 Hb_104855_020 Hb_104855_020 Hb_143232_020--Hb_104855_020 Hb_001623_020 Hb_001623_020 Hb_143232_020--Hb_001623_020 Hb_004994_070 Hb_004994_070 Hb_093204_010--Hb_004994_070 Hb_000959_290 Hb_000959_290 Hb_093204_010--Hb_000959_290 Hb_006519_010 Hb_006519_010 Hb_093204_010--Hb_006519_010 Hb_004767_040 Hb_004767_040 Hb_093204_010--Hb_004767_040 Hb_002572_060 Hb_002572_060 Hb_093204_010--Hb_002572_060 Hb_073423_010--Hb_002486_030 Hb_073423_010--Hb_008579_010 Hb_142691_010 Hb_142691_010 Hb_073423_010--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_073423_010--Hb_012691_040 Hb_073423_010--Hb_004117_360 Hb_001514_110 Hb_001514_110 Hb_004117_360--Hb_001514_110 Hb_004117_360--Hb_012691_040 Hb_004117_360--Hb_002486_030 Hb_004117_360--Hb_008579_010 Hb_004117_360--Hb_142691_010 Hb_002486_030--Hb_008579_010 Hb_002486_030--Hb_142691_010 Hb_002486_030--Hb_012691_040 Hb_002486_030--Hb_104855_020 Hb_008579_010--Hb_142691_010 Hb_008579_010--Hb_012691_040 Hb_008579_010--Hb_104855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.55004 0.365371 0.450013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis