Hb_011139_030

Information

Type -
Description -
Location Contig11139: 39501-55418
Sequence    

Annotation

kegg
ID rcu:RCOM_1410020
description hypothetical protein
nr
ID XP_012079253.1
description PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID A0A067K763
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12413 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03466: 39615-43175 , PASA_asmbl_03467: 43213-43455 , PASA_asmbl_03469: 44447-55409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
2 Hb_000618_030 0.0698941761 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
3 Hb_000820_170 0.0707234815 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
4 Hb_000025_110 0.0717282059 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
5 Hb_048937_040 0.0736561782 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_001675_180 0.0758288472 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
7 Hb_006064_010 0.0764371099 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
8 Hb_003728_080 0.0787888532 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
9 Hb_004102_140 0.0793525758 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000072_220 0.0796289089 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
11 Hb_003938_080 0.0799931405 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
12 Hb_010139_040 0.0813038924 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_009411_010 0.0816318334 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
14 Hb_004447_060 0.0828661541 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
15 Hb_010457_030 0.0837422034 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
16 Hb_000796_220 0.0837827763 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
17 Hb_000502_050 0.0841035807 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
18 Hb_001493_030 0.0842797955 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
19 Hb_000879_200 0.0848825252 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
20 Hb_000170_210 0.0857521458 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011139_030 Hb_011139_030 Hb_000618_030 Hb_000618_030 Hb_011139_030--Hb_000618_030 Hb_000820_170 Hb_000820_170 Hb_011139_030--Hb_000820_170 Hb_000025_110 Hb_000025_110 Hb_011139_030--Hb_000025_110 Hb_048937_040 Hb_048937_040 Hb_011139_030--Hb_048937_040 Hb_001675_180 Hb_001675_180 Hb_011139_030--Hb_001675_180 Hb_006064_010 Hb_006064_010 Hb_011139_030--Hb_006064_010 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_000025_110--Hb_001444_010 Hb_000025_110--Hb_006252_040 Hb_000679_130 Hb_000679_130 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_000690_130 Hb_000690_130 Hb_006064_010--Hb_000690_130 Hb_003728_080 Hb_003728_080 Hb_006064_010--Hb_003728_080 Hb_006064_010--Hb_000879_200 Hb_007026_030 Hb_007026_030 Hb_006064_010--Hb_007026_030 Hb_009646_030 Hb_009646_030 Hb_006064_010--Hb_009646_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2148 4.09727 4.55424 3.59644 8.93394 12.1663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24301 5.70494 7.64438 4.2218 4.99246

CAGE analysis