Hb_011139_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig11139: 63218-66125
Sequence    

Annotation

kegg
ID pmum:103339903
description transcription factor SPATULA
nr
ID XP_012079251.1
description PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FUA4
description Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1
trembl
ID A0A067K6S9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12412 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor spatula-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03470: 63233-65403 , PASA_asmbl_03472: 65917-66251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
2 Hb_011606_020 0.1016369277 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
3 Hb_043792_040 0.1158306577 - - hypothetical protein, partial [Rosa rugosa]
4 Hb_000027_260 0.1192192233 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
5 Hb_000243_350 0.1194713666 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
6 Hb_074197_040 0.1287842469 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
7 Hb_001014_070 0.1309892468 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
8 Hb_002876_270 0.1310456886 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
9 Hb_003305_040 0.1316791239 - - AP47/50p mRNA family protein [Populus trichocarpa]
10 Hb_001014_060 0.1351275838 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_000116_130 0.1357947645 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
12 Hb_011224_100 0.1377847474 - - conserved hypothetical protein [Ricinus communis]
13 Hb_021943_090 0.1389162834 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
14 Hb_002110_100 0.1399724279 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_000979_130 0.1406716679 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
16 Hb_000854_040 0.1412437236 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
17 Hb_007416_210 0.142110722 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
18 Hb_001481_130 0.1422863636 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001663_040 0.1423630699 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
20 Hb_000638_130 0.1426507979 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]

Gene co-expression network

sample Hb_011139_040 Hb_011139_040 Hb_011606_020 Hb_011606_020 Hb_011139_040--Hb_011606_020 Hb_043792_040 Hb_043792_040 Hb_011139_040--Hb_043792_040 Hb_000027_260 Hb_000027_260 Hb_011139_040--Hb_000027_260 Hb_000243_350 Hb_000243_350 Hb_011139_040--Hb_000243_350 Hb_074197_040 Hb_074197_040 Hb_011139_040--Hb_074197_040 Hb_001014_070 Hb_001014_070 Hb_011139_040--Hb_001014_070 Hb_000116_130 Hb_000116_130 Hb_011606_020--Hb_000116_130 Hb_000107_430 Hb_000107_430 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_002110_100 Hb_002110_100 Hb_011606_020--Hb_002110_100 Hb_000062_540 Hb_000062_540 Hb_043792_040--Hb_000062_540 Hb_007416_210 Hb_007416_210 Hb_043792_040--Hb_007416_210 Hb_001936_130 Hb_001936_130 Hb_043792_040--Hb_001936_130 Hb_000409_030 Hb_000409_030 Hb_043792_040--Hb_000409_030 Hb_002289_060 Hb_002289_060 Hb_043792_040--Hb_002289_060 Hb_019181_040 Hb_019181_040 Hb_043792_040--Hb_019181_040 Hb_000096_140 Hb_000096_140 Hb_000027_260--Hb_000096_140 Hb_000454_090 Hb_000454_090 Hb_000027_260--Hb_000454_090 Hb_032202_040 Hb_032202_040 Hb_000027_260--Hb_032202_040 Hb_007533_040 Hb_007533_040 Hb_000027_260--Hb_007533_040 Hb_005601_040 Hb_005601_040 Hb_000027_260--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_000027_260--Hb_004108_160 Hb_003305_040 Hb_003305_040 Hb_000243_350--Hb_003305_040 Hb_000243_350--Hb_002110_100 Hb_005701_120 Hb_005701_120 Hb_000243_350--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_000243_350--Hb_000197_020 Hb_000252_100 Hb_000252_100 Hb_000243_350--Hb_000252_100 Hb_000243_350--Hb_011606_020 Hb_000078_140 Hb_000078_140 Hb_074197_040--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_074197_040--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_074197_040--Hb_011377_040 Hb_001301_270 Hb_001301_270 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_074197_040--Hb_006970_020 Hb_001014_060 Hb_001014_060 Hb_001014_070--Hb_001014_060 Hb_000025_350 Hb_000025_350 Hb_001014_070--Hb_000025_350 Hb_001357_200 Hb_001357_200 Hb_001014_070--Hb_001357_200 Hb_000363_290 Hb_000363_290 Hb_001014_070--Hb_000363_290 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_001014_070--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14474 0.379086 0.764041 1.29036 0.426034 0.19858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.403616 0.375238 1.13225 0.496463 1.08008

CAGE analysis