Hb_011139_050

Information

Type -
Description -
Location Contig11139: 78311-82232
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18300g
description POPTRDRAFT_818397; nicotinate phosphoribosyltransferase family protein
nr
ID XP_002306477.1
description nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
swissprot
ID Q8RWM2
description Nicotinate phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=NAPRT1 PE=2 SV=1
trembl
ID B9H6H6
description Nicotinate phosphoribosyltransferase family protein OS=Populus trichocarpa GN=POPTR_0005s18300g PE=4 SV=1
Gene Ontology
ID GO:0016757
description nicotinate phosphoribosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_050 0.0 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
2 Hb_011872_010 0.2703135177 - - -
3 Hb_000272_040 0.2869402141 - - -
4 Hb_148800_010 0.2884044081 - - -
5 Hb_000656_050 0.2914035741 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
6 Hb_007317_090 0.2939168856 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
7 Hb_004466_050 0.2994881028 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
8 Hb_080952_050 0.3002569575 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
9 Hb_002235_290 0.3003251324 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
10 Hb_115435_010 0.3020629388 - - -
11 Hb_067730_010 0.3025992847 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
12 Hb_005754_030 0.3115238714 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
13 Hb_001050_050 0.3188233734 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
14 Hb_002988_030 0.319760143 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
15 Hb_002141_040 0.3198266688 - - -
16 Hb_006120_080 0.321987365 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
17 Hb_001050_020 0.3240610983 - - -
18 Hb_012490_110 0.3257572599 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
19 Hb_001625_020 0.3269834041 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
20 Hb_000186_310 0.3284878138 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011139_050 Hb_011139_050 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_000272_040 Hb_000272_040 Hb_011139_050--Hb_000272_040 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_000656_050 Hb_000656_050 Hb_011139_050--Hb_000656_050 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_011872_010--Hb_148800_010 Hb_012539_030 Hb_012539_030 Hb_011872_010--Hb_012539_030 Hb_001050_030 Hb_001050_030 Hb_011872_010--Hb_001050_030 Hb_011872_010--Hb_007317_090 Hb_038862_010 Hb_038862_010 Hb_011872_010--Hb_038862_010 Hb_000116_070 Hb_000116_070 Hb_000272_040--Hb_000116_070 Hb_002253_090 Hb_002253_090 Hb_000272_040--Hb_002253_090 Hb_122273_010 Hb_122273_010 Hb_000272_040--Hb_122273_010 Hb_004125_120 Hb_004125_120 Hb_000272_040--Hb_004125_120 Hb_016567_010 Hb_016567_010 Hb_000272_040--Hb_016567_010 Hb_148800_010--Hb_012539_030 Hb_000703_180 Hb_000703_180 Hb_148800_010--Hb_000703_180 Hb_004208_010 Hb_004208_010 Hb_148800_010--Hb_004208_010 Hb_148800_010--Hb_007317_090 Hb_148800_010--Hb_038862_010 Hb_177019_010 Hb_177019_010 Hb_000656_050--Hb_177019_010 Hb_000186_310 Hb_000186_310 Hb_000656_050--Hb_000186_310 Hb_004088_050 Hb_004088_050 Hb_000656_050--Hb_004088_050 Hb_007472_020 Hb_007472_020 Hb_000656_050--Hb_007472_020 Hb_004502_010 Hb_004502_010 Hb_000656_050--Hb_004502_010 Hb_005754_030 Hb_005754_030 Hb_007317_090--Hb_005754_030 Hb_000031_230 Hb_000031_230 Hb_007317_090--Hb_000031_230 Hb_000261_400 Hb_000261_400 Hb_007317_090--Hb_000261_400 Hb_002986_070 Hb_002986_070 Hb_007317_090--Hb_002986_070 Hb_000589_420 Hb_000589_420 Hb_007317_090--Hb_000589_420 Hb_006422_020 Hb_006422_020 Hb_007317_090--Hb_006422_020 Hb_001396_240 Hb_001396_240 Hb_004466_050--Hb_001396_240 Hb_052128_010 Hb_052128_010 Hb_004466_050--Hb_052128_010 Hb_001408_030 Hb_001408_030 Hb_004466_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309426 0.0832427 0.0466594 0.0264988 0 0.136928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0560354 0 0.0227142 0.112011

CAGE analysis