Hb_011139_060

Information

Type -
Description -
Location Contig11139: 82256-83663
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011139_060 0.0 - - -
2 Hb_000258_360 0.1539409553 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
3 Hb_169329_010 0.2098247946 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
4 Hb_013358_100 0.2211188876 - - unknown [Medicago truncatula]
5 Hb_054885_010 0.2383647463 - - -
6 Hb_144550_020 0.2403974122 - - -
7 Hb_177152_010 0.2420419412 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
8 Hb_160203_010 0.2456986329 - - -
9 Hb_142751_010 0.2466085645 - - conserved hypothetical protein [Ricinus communis]
10 Hb_070385_010 0.2481766617 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
11 Hb_101020_010 0.2486040241 - - -
12 Hb_065841_010 0.25211211 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
13 Hb_001589_070 0.2521374985 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_159307_010 0.2530877457 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_088428_010 0.2536583321 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
16 Hb_001916_060 0.2538732173 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
17 Hb_130134_030 0.2540108605 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
18 Hb_004935_080 0.255500973 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
19 Hb_000979_010 0.2570902259 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
20 Hb_068569_010 0.258631882 - - -

Gene co-expression network

sample Hb_011139_060 Hb_011139_060 Hb_000258_360 Hb_000258_360 Hb_011139_060--Hb_000258_360 Hb_169329_010 Hb_169329_010 Hb_011139_060--Hb_169329_010 Hb_013358_100 Hb_013358_100 Hb_011139_060--Hb_013358_100 Hb_054885_010 Hb_054885_010 Hb_011139_060--Hb_054885_010 Hb_144550_020 Hb_144550_020 Hb_011139_060--Hb_144550_020 Hb_177152_010 Hb_177152_010 Hb_011139_060--Hb_177152_010 Hb_000258_360--Hb_169329_010 Hb_000258_360--Hb_177152_010 Hb_000258_360--Hb_144550_020 Hb_060054_010 Hb_060054_010 Hb_000258_360--Hb_060054_010 Hb_000258_360--Hb_013358_100 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_142751_010 Hb_142751_010 Hb_054885_010--Hb_142751_010 Hb_000886_060 Hb_000886_060 Hb_054885_010--Hb_000886_060 Hb_011953_030 Hb_011953_030 Hb_054885_010--Hb_011953_030 Hb_003376_070 Hb_003376_070 Hb_054885_010--Hb_003376_070 Hb_000056_230 Hb_000056_230 Hb_054885_010--Hb_000056_230 Hb_000329_420 Hb_000329_420 Hb_054885_010--Hb_000329_420 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_177152_010--Hb_035436_010 Hb_177152_010--Hb_065841_010 Hb_178620_010 Hb_178620_010 Hb_177152_010--Hb_178620_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0647 7.67377 4.36181 13.1482 5.60376 19.6751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77979 0 0 0.660677 0

CAGE analysis