Hb_011145_020

Information

Type -
Description -
Location Contig11145: 32946-33872
Sequence    

Annotation

kegg
ID pxb:103942759
description metalloendoproteinase 1-like
nr
ID XP_009351242.1
description PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID M5XKQ8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb025548mg PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011145_020 0.0 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
2 Hb_033363_080 0.0724329966 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
3 Hb_164283_010 0.0739150702 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_002749_070 0.0749537935 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
5 Hb_001691_060 0.0757126826 - - lipoxygenase, putative [Ricinus communis]
6 Hb_004544_070 0.0788290048 - - unnamed protein product [Vitis vinifera]
7 Hb_018591_010 0.0858364663 - - kinase, putative [Ricinus communis]
8 Hb_000438_190 0.086677086 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_148914_010 0.100093776 - - glutathione s-transferase, putative [Ricinus communis]
10 Hb_000025_740 0.1010244756 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
11 Hb_001922_010 0.1021534425 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_008418_010 0.1067187418 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
13 Hb_004774_060 0.1085858199 - - -
14 Hb_000005_350 0.1184888813 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
15 Hb_006637_040 0.1193727534 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_109673_010 0.121898642 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_000934_170 0.1222645785 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000589_100 0.1230015229 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_012796_050 0.1243432407 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
20 Hb_001545_270 0.1245584491 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011145_020 Hb_011145_020 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_164283_010 Hb_164283_010 Hb_011145_020--Hb_164283_010 Hb_002749_070 Hb_002749_070 Hb_011145_020--Hb_002749_070 Hb_001691_060 Hb_001691_060 Hb_011145_020--Hb_001691_060 Hb_004544_070 Hb_004544_070 Hb_011145_020--Hb_004544_070 Hb_018591_010 Hb_018591_010 Hb_011145_020--Hb_018591_010 Hb_004774_060 Hb_004774_060 Hb_033363_080--Hb_004774_060 Hb_175968_010 Hb_175968_010 Hb_033363_080--Hb_175968_010 Hb_000438_190 Hb_000438_190 Hb_033363_080--Hb_000438_190 Hb_012796_050 Hb_012796_050 Hb_033363_080--Hb_012796_050 Hb_004055_180 Hb_004055_180 Hb_033363_080--Hb_004055_180 Hb_164283_010--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_004544_070 Hb_006637_040 Hb_006637_040 Hb_164283_010--Hb_006637_040 Hb_164283_010--Hb_002749_070 Hb_002749_070--Hb_004544_070 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_002749_070--Hb_018591_010 Hb_002749_070--Hb_000438_190 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_000075_030 Hb_000075_030 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_001691_060--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_001691_060--Hb_000589_100 Hb_004544_070--Hb_018591_010 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_006637_040 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_006637_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.337493 0.656149 0.890997 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.75854 0.356682

CAGE analysis