Hb_011150_010

Information

Type -
Description -
Location Contig11150: 8738-14706
Sequence    

Annotation

kegg
ID rcu:RCOM_0436100
description poly-A binding protein, putative
nr
ID XP_012089901.1
description PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
swissprot
ID O74978
description Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1
trembl
ID A0A067L9C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01522 PE=4 SV=1
Gene Ontology
ID GO:0000166
description uncharacterized rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03515: 8723-14645 , PASA_asmbl_03516: 13458-13594
cDNA
(Sanger)
(ID:Location)		 009_I05.ab1: 8723-13397 , 034_C16.ab1: 8723-13635

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011150_010 0.0 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
2 Hb_002701_240 0.0741211546 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
3 Hb_004375_100 0.0777127898 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
4 Hb_033834_040 0.0787615866 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002043_130 0.0828036012 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
6 Hb_010068_020 0.0845572404 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
7 Hb_000270_370 0.089616273 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
8 Hb_010423_040 0.0908050324 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
9 Hb_002890_140 0.092779133 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
10 Hb_000103_090 0.0928243234 - - PREDICTED: protein RDM1 [Jatropha curcas]
11 Hb_027073_040 0.0936872963 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
12 Hb_002214_040 0.094911434 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_001421_060 0.0959339464 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
14 Hb_000327_190 0.0969175782 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
15 Hb_001814_050 0.0973021897 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_108350_010 0.0977335824 - - GTP-binding protein erg, putative [Ricinus communis]
17 Hb_001006_190 0.099370297 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
18 Hb_000832_140 0.1005781991 - - actin depolymerizing factor 4 [Hevea brasiliensis]
19 Hb_156947_010 0.1015417147 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
20 Hb_003599_040 0.1016821375 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_011150_010 Hb_011150_010 Hb_002701_240 Hb_002701_240 Hb_011150_010--Hb_002701_240 Hb_004375_100 Hb_004375_100 Hb_011150_010--Hb_004375_100 Hb_033834_040 Hb_033834_040 Hb_011150_010--Hb_033834_040 Hb_002043_130 Hb_002043_130 Hb_011150_010--Hb_002043_130 Hb_010068_020 Hb_010068_020 Hb_011150_010--Hb_010068_020 Hb_000270_370 Hb_000270_370 Hb_011150_010--Hb_000270_370 Hb_002701_240--Hb_004375_100 Hb_156947_010 Hb_156947_010 Hb_002701_240--Hb_156947_010 Hb_005618_140 Hb_005618_140 Hb_002701_240--Hb_005618_140 Hb_027073_040 Hb_027073_040 Hb_002701_240--Hb_027073_040 Hb_002701_240--Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_000172_320 Hb_000172_320 Hb_002043_130--Hb_000172_320 Hb_002043_130--Hb_001814_050 Hb_002043_130--Hb_010068_020 Hb_009793_010 Hb_009793_010 Hb_002043_130--Hb_009793_010 Hb_002043_130--Hb_004375_100 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_000270_370--Hb_033834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51439 1.06233 2.82695 3.91026 4.94271 8.17974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33584 12.3212 5.60443 6.87333 3.22176

CAGE analysis