Hb_011161_010

Information

Type -
Description -
Location Contig11161: 8466-11051
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08700g
description POPTRDRAFT_551485; hypothetical protein
nr
ID XP_012078186.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
swissprot
ID O65238
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2
trembl
ID A0A067KKI6
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_12062 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at5g35370

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
2 Hb_002810_020 0.072872988 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
3 Hb_000406_220 0.0771728347 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
4 Hb_002154_030 0.0945210282 - - RNA binding protein, putative [Ricinus communis]
5 Hb_004128_060 0.0987618724 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
6 Hb_181235_010 0.0998140517 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_000032_290 0.1021441183 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
8 Hb_007590_010 0.1022371935 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000787_110 0.1039707321 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
10 Hb_034585_060 0.1039747568 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
11 Hb_029584_130 0.1066464059 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
12 Hb_000022_250 0.1068281309 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
13 Hb_002477_030 0.1082170018 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
14 Hb_005839_120 0.1118761001 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
15 Hb_000007_150 0.1119672303 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
16 Hb_001488_330 0.112022532 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
17 Hb_012395_220 0.1124006366 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
18 Hb_004129_130 0.1133345185 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000554_020 0.1161732286 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
20 Hb_005307_030 0.117075391 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]

Gene co-expression network

sample Hb_011161_010 Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_011161_010--Hb_002810_020 Hb_000406_220 Hb_000406_220 Hb_011161_010--Hb_000406_220 Hb_002154_030 Hb_002154_030 Hb_011161_010--Hb_002154_030 Hb_004128_060 Hb_004128_060 Hb_011161_010--Hb_004128_060 Hb_181235_010 Hb_181235_010 Hb_011161_010--Hb_181235_010 Hb_000032_290 Hb_000032_290 Hb_011161_010--Hb_000032_290 Hb_000022_250 Hb_000022_250 Hb_002810_020--Hb_000022_250 Hb_002810_020--Hb_000406_220 Hb_002810_020--Hb_181235_010 Hb_002810_020--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_002810_020--Hb_002477_030 Hb_000554_020 Hb_000554_020 Hb_000406_220--Hb_000554_020 Hb_000406_220--Hb_000032_290 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_002154_030--Hb_181235_010 Hb_000207_390 Hb_000207_390 Hb_002154_030--Hb_000207_390 Hb_000062_240 Hb_000062_240 Hb_002154_030--Hb_000062_240 Hb_000803_190 Hb_000803_190 Hb_002154_030--Hb_000803_190 Hb_001301_200 Hb_001301_200 Hb_002154_030--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_002154_030--Hb_007163_090 Hb_004128_060--Hb_000554_020 Hb_004128_060--Hb_000406_220 Hb_004128_060--Hb_000032_290 Hb_005357_030 Hb_005357_030 Hb_004128_060--Hb_005357_030 Hb_004128_060--Hb_181235_010 Hb_006949_040 Hb_006949_040 Hb_004128_060--Hb_006949_040 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_181235_010--Hb_000062_240 Hb_181235_010--Hb_000032_290 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355992 0.35387 0.0851719 0.146879 0.321807 0.609396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187356 0.509302 0.485794 0.186234 0.0855312

CAGE analysis