Hb_011161_040

Information

Type -
Description -
Location Contig11161: 30195-31752
Sequence    

Annotation

kegg
ID rcu:RCOM_2028480
description hypothetical protein
nr
ID XP_012078191.1
description PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12065 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105638905 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03521: 29820-31814 , PASA_asmbl_03522: 29952-31770
cDNA
(Sanger)
(ID:Location)		 023_B08.ab1: 30006-31770 , 028_A20.ab1: 30006-31770 , 050_F20.ab1: 30005-31751

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_040 0.0 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
2 Hb_004453_150 0.0778473576 - - BnaC02g13240D [Brassica napus]
3 Hb_011139_020 0.0789675073 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
4 Hb_001019_090 0.0791036609 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_025193_050 0.083039335 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
6 Hb_000152_430 0.083602843 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
7 Hb_001133_020 0.0843905167 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
8 Hb_024650_050 0.085628457 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
9 Hb_000362_210 0.0866170158 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_000089_130 0.0867135955 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
11 Hb_005686_110 0.0868827006 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
12 Hb_000200_210 0.0890352549 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002749_100 0.089719147 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
14 Hb_007166_050 0.0901080494 - - -
15 Hb_001427_120 0.0901155893 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_012515_010 0.0901253523 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
17 Hb_002078_050 0.0907945288 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
18 Hb_000189_530 0.0909359862 - - 40S ribosomal protein S24B [Hevea brasiliensis]
19 Hb_084849_020 0.0910891379 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_000175_400 0.0942478619 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011161_040 Hb_011161_040 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_001133_020 Hb_001133_020 Hb_011161_040--Hb_001133_020 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_025193_050--Hb_012515_010 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_025193_050--Hb_000152_430 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_018133_060 Hb_018133_060 Hb_001133_020--Hb_018133_060 Hb_000086_070 Hb_000086_070 Hb_001133_020--Hb_000086_070 Hb_023226_010 Hb_023226_010 Hb_001133_020--Hb_023226_010 Hb_000087_020 Hb_000087_020 Hb_001133_020--Hb_000087_020 Hb_084849_020 Hb_084849_020 Hb_001133_020--Hb_084849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.036 18.6856 24.3548 49.1114 103.959 233.14
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
203.321 233.022 144.427 34.0309 13.2941

CAGE analysis