Hb_011161_060

Information

Type transcription factor
Description TF Family: GRAS
Location Contig11161: 43589-45049
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08660g
description POPTRDRAFT_754607; scarecrow transcription factor family protein
nr
ID XP_012078195.1
description PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
swissprot
ID Q5NE24
description Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1
trembl
ID A0A067KKJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12067 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nodulation-signaling pathway 2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_060 0.0 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
2 Hb_000671_010 0.0031894712 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
3 Hb_002757_050 0.0148030731 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
4 Hb_000720_010 0.0277878278 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
5 Hb_000205_290 0.030718073 - - -
6 Hb_001213_010 0.0577020405 - - PREDICTED: laccase-7 [Jatropha curcas]
7 Hb_000948_040 0.0584983778 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
8 Hb_054102_010 0.063468852 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_005066_010 0.0699468715 - - FAD-binding domain-containing family protein [Populus trichocarpa]
10 Hb_033865_020 0.0737764021 - - -
11 Hb_148383_010 0.0762029849 - - PREDICTED: protein YLS9 [Jatropha curcas]
12 Hb_006153_190 0.0841588395 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
13 Hb_126535_010 0.0855105809 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
14 Hb_000576_080 0.0877294707 - - conserved hypothetical protein [Ricinus communis]
15 Hb_124247_030 0.0984340012 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
16 Hb_009545_040 0.0988101865 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001546_090 0.1043810483 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
18 Hb_025490_030 0.1049621771 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
19 Hb_177880_010 0.1175472201 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_004834_020 0.1176879487 - - major allergen Pru ar 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_011161_060 Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_011161_060--Hb_000671_010 Hb_002757_050 Hb_002757_050 Hb_011161_060--Hb_002757_050 Hb_000720_010 Hb_000720_010 Hb_011161_060--Hb_000720_010 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_001213_010 Hb_001213_010 Hb_011161_060--Hb_001213_010 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040 Hb_000671_010--Hb_002757_050 Hb_000671_010--Hb_000205_290 Hb_000671_010--Hb_000720_010 Hb_000671_010--Hb_000948_040 Hb_000671_010--Hb_001213_010 Hb_002757_050--Hb_000205_290 Hb_002757_050--Hb_000720_010 Hb_002757_050--Hb_000948_040 Hb_005066_010 Hb_005066_010 Hb_002757_050--Hb_005066_010 Hb_000720_010--Hb_001213_010 Hb_054102_010 Hb_054102_010 Hb_000720_010--Hb_054102_010 Hb_148383_010 Hb_148383_010 Hb_000720_010--Hb_148383_010 Hb_000205_290--Hb_000948_040 Hb_000205_290--Hb_005066_010 Hb_033865_020 Hb_033865_020 Hb_000205_290--Hb_033865_020 Hb_001213_010--Hb_054102_010 Hb_001213_010--Hb_148383_010 Hb_000576_080 Hb_000576_080 Hb_001213_010--Hb_000576_080 Hb_000948_040--Hb_005066_010 Hb_000948_040--Hb_033865_020 Hb_001546_090 Hb_001546_090 Hb_000948_040--Hb_001546_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0338385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.293278 0

CAGE analysis