Hb_011169_010

Information

Type -
Description -
Location Contig11169: 20468-22756
Sequence    

Annotation

kegg
ID rcu:RCOM_1326360
description mta/sah nucleosidase, putative
nr
ID XP_002520043.1
description mta/sah nucleosidase, putative [Ricinus communis]
swissprot
ID Q07469
description Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1
trembl
ID B9S224
description Mta/sah nucleosidase, putative OS=Ricinus communis GN=RCOM_1326360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03526: 20643-22692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011169_010 0.0 - - mta/sah nucleosidase, putative [Ricinus communis]
2 Hb_003765_010 0.1058613921 - - berberine bridge enzyme [Hevea brasiliensis]
3 Hb_000107_240 0.1208023249 - - organic anion transporter, putative [Ricinus communis]
4 Hb_003020_200 0.1231337867 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
5 Hb_000868_020 0.1294961749 - - -
6 Hb_000087_010 0.129663196 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_103468_010 0.1381394591 - - protein binding protein, putative [Ricinus communis]
8 Hb_005357_170 0.1381419593 - - Pectinesterase precursor, putative [Ricinus communis]
9 Hb_000193_130 0.1418357617 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001634_050 0.1421396133 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
11 Hb_010327_060 0.1421903923 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
12 Hb_010833_010 0.142680671 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
13 Hb_006249_010 0.1439037765 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
14 Hb_000028_090 0.1453498842 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
15 Hb_001887_010 0.1456330023 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_000115_210 0.1476056351 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
17 Hb_002757_040 0.1477161166 - - -
18 Hb_003528_090 0.148037188 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
19 Hb_000307_160 0.1480604543 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
20 Hb_005455_100 0.1488661063 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011169_010 Hb_011169_010 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_003020_200 Hb_003020_200 Hb_011169_010--Hb_003020_200 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_000087_010 Hb_000087_010 Hb_011169_010--Hb_000087_010 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_005357_170 Hb_005357_170 Hb_003765_010--Hb_005357_170 Hb_001887_010 Hb_001887_010 Hb_003765_010--Hb_001887_010 Hb_153544_020 Hb_153544_020 Hb_003765_010--Hb_153544_020 Hb_003765_010--Hb_000868_020 Hb_003754_010 Hb_003754_010 Hb_003765_010--Hb_003754_010 Hb_010327_060 Hb_010327_060 Hb_003765_010--Hb_010327_060 Hb_001634_050 Hb_001634_050 Hb_000107_240--Hb_001634_050 Hb_006249_010 Hb_006249_010 Hb_000107_240--Hb_006249_010 Hb_000307_160 Hb_000307_160 Hb_000107_240--Hb_000307_160 Hb_000107_240--Hb_000868_020 Hb_012180_070 Hb_012180_070 Hb_000107_240--Hb_012180_070 Hb_001401_130 Hb_001401_130 Hb_000107_240--Hb_001401_130 Hb_000617_300 Hb_000617_300 Hb_003020_200--Hb_000617_300 Hb_004657_070 Hb_004657_070 Hb_003020_200--Hb_004657_070 Hb_007311_050 Hb_007311_050 Hb_003020_200--Hb_007311_050 Hb_102772_010 Hb_102772_010 Hb_003020_200--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_003020_200--Hb_000622_190 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000868_020--Hb_000307_160 Hb_000868_020--Hb_006249_010 Hb_004884_050 Hb_004884_050 Hb_000087_010--Hb_004884_050 Hb_001741_110 Hb_001741_110 Hb_000087_010--Hb_001741_110 Hb_000115_210 Hb_000115_210 Hb_000087_010--Hb_000115_210 Hb_002374_540 Hb_002374_540 Hb_000087_010--Hb_002374_540 Hb_006889_010 Hb_006889_010 Hb_000087_010--Hb_006889_010 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_014834_100 Hb_014834_100 Hb_103468_010--Hb_014834_100 Hb_103468_010--Hb_006249_010 Hb_027577_010 Hb_027577_010 Hb_103468_010--Hb_027577_010 Hb_103468_010--Hb_000868_020 Hb_180518_010 Hb_180518_010 Hb_103468_010--Hb_180518_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7573 0.700892 23.1515 790.728 0 0.352754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.19199 2.4294 4.37942 4.78948 97.0659

CAGE analysis