Hb_011173_030

Information

Type -
Description -
Location Contig11173: 50630-65655
Sequence    

Annotation

kegg
ID rcu:RCOM_0481440
description pumilio, putative
nr
ID XP_002530940.1
description pumilio, putative [Ricinus communis]
swissprot
ID Q9SS47
description Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
trembl
ID B9SY71
description Pumilio, putative OS=Ricinus communis GN=RCOM_0481440 PE=4 SV=1
Gene Ontology
ID GO:0003729
description pumilio homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03554: 50820-51555 , PASA_asmbl_03555: 50376-51541 , PASA_asmbl_03556: 51962-56122 , PASA_asmbl_03557: 56123-56582 , PASA_asmbl_03558: 56595-65417 , PASA_asmbl_03559: 58998-59247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011173_030 0.0 - - pumilio, putative [Ricinus communis]
2 Hb_028487_010 0.0508438999 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
3 Hb_000740_100 0.0603786718 - - calpain, putative [Ricinus communis]
4 Hb_104061_020 0.070408796 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
5 Hb_002107_070 0.0705354645 - - hypothetical protein RCOM_1598630 [Ricinus communis]
6 Hb_002784_110 0.0712154156 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_001821_090 0.0731102654 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
8 Hb_000307_210 0.0742650134 - - Transportin 1 isoform 1 [Theobroma cacao]
9 Hb_000395_070 0.0777012957 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
10 Hb_001575_010 0.0807079367 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000856_140 0.0808455534 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
12 Hb_000505_020 0.0810139526 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_002329_040 0.0814638735 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_005143_030 0.0822240979 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
15 Hb_000446_120 0.0823827097 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
16 Hb_004627_060 0.0844526699 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
17 Hb_001623_480 0.0850027725 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
18 Hb_148909_030 0.0854469914 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
19 Hb_000579_230 0.0857207295 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
20 Hb_000069_410 0.085852161 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_011173_030 Hb_011173_030 Hb_028487_010 Hb_028487_010 Hb_011173_030--Hb_028487_010 Hb_000740_100 Hb_000740_100 Hb_011173_030--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_011173_030--Hb_104061_020 Hb_002107_070 Hb_002107_070 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_011173_030--Hb_001821_090 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_028487_010--Hb_001821_090 Hb_028487_010--Hb_002107_070 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_000740_100--Hb_104061_020 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_001821_090 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1376 15.4517 5.87984 6.38994 16.6715 13.0332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58989 4.27574 7.53671 17.9489 11.2981

CAGE analysis