Hb_011173_040

Information

Type -
Description -
Location Contig11173: 67059-68309
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03640g
description POPTRDRAFT_563712; hypothetical protein
nr
ID XP_011031702.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067K5Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16147 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03561: 67333-67807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011173_040 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]
2 Hb_001097_050 0.0869968457 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_010997_080 0.0988693075 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
4 Hb_000336_250 0.0996689004 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
5 Hb_028962_020 0.1006997034 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
6 Hb_001864_060 0.1043690943 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_011491_010 0.1073689982 - - Protein YME1, putative [Ricinus communis]
8 Hb_003052_140 0.1080105495 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
9 Hb_002864_010 0.1091301159 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
10 Hb_005675_040 0.1092914262 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
11 Hb_001252_010 0.1098881404 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
12 Hb_003609_030 0.1098973267 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
13 Hb_000562_090 0.1103200795 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
14 Hb_000181_070 0.112546322 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000592_090 0.1142744845 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
16 Hb_004767_050 0.1143543314 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
17 Hb_002671_140 0.1146193853 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_011512_080 0.1150705861 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
19 Hb_000832_030 0.115286108 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
20 Hb_002045_240 0.1161321769 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_011173_040 Hb_011173_040 Hb_001097_050 Hb_001097_050 Hb_011173_040--Hb_001097_050 Hb_010997_080 Hb_010997_080 Hb_011173_040--Hb_010997_080 Hb_000336_250 Hb_000336_250 Hb_011173_040--Hb_000336_250 Hb_028962_020 Hb_028962_020 Hb_011173_040--Hb_028962_020 Hb_001864_060 Hb_001864_060 Hb_011173_040--Hb_001864_060 Hb_011491_010 Hb_011491_010 Hb_011173_040--Hb_011491_010 Hb_000099_080 Hb_000099_080 Hb_001097_050--Hb_000099_080 Hb_002045_240 Hb_002045_240 Hb_001097_050--Hb_002045_240 Hb_000347_180 Hb_000347_180 Hb_001097_050--Hb_000347_180 Hb_001538_130 Hb_001538_130 Hb_001097_050--Hb_001538_130 Hb_002477_280 Hb_002477_280 Hb_001097_050--Hb_002477_280 Hb_000365_390 Hb_000365_390 Hb_001097_050--Hb_000365_390 Hb_002205_110 Hb_002205_110 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_003052_140 Hb_003052_140 Hb_000336_250--Hb_003052_140 Hb_003609_030 Hb_003609_030 Hb_000336_250--Hb_003609_030 Hb_031527_020 Hb_031527_020 Hb_000336_250--Hb_031527_020 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000479_220 Hb_000479_220 Hb_000336_250--Hb_000479_220 Hb_007416_180 Hb_007416_180 Hb_000336_250--Hb_007416_180 Hb_000679_310 Hb_000679_310 Hb_028962_020--Hb_000679_310 Hb_002028_210 Hb_002028_210 Hb_028962_020--Hb_002028_210 Hb_001408_040 Hb_001408_040 Hb_028962_020--Hb_001408_040 Hb_028962_020--Hb_002205_110 Hb_005653_090 Hb_005653_090 Hb_028962_020--Hb_005653_090 Hb_000886_050 Hb_000886_050 Hb_028962_020--Hb_000886_050 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9361 12.4008 3.22896 7.29176 5.0014 9.95857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.79487 9.11098 5.60475 4.70465 5.29155

CAGE analysis