Hb_011173_050

Information

Type -
Description -
Location Contig11173: 71658-83077
Sequence    

Annotation

kegg
ID rcu:RCOM_0481420
description cysteine-type peptidase, putative
nr
ID XP_012080939.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID A0A067K2W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16146 PE=4 SV=1
Gene Ontology
ID GO:0050896
description otu domain-containing protein ddb_g0284757

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03562: 71625-83120
cDNA
(Sanger)
(ID:Location)		 038_F16.ab1: 81656-83120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011173_050 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
2 Hb_005568_120 0.0657851338 - - Prephenate dehydratase [Hevea brasiliensis]
3 Hb_000175_060 0.068828612 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
4 Hb_000111_330 0.076153199 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
5 Hb_000368_010 0.0796575452 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
6 Hb_000215_060 0.0800808329 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
7 Hb_000373_130 0.0812193719 - - PREDICTED: protein FAM188A [Jatropha curcas]
8 Hb_028515_010 0.0829122717 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
9 Hb_000347_410 0.0838372826 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_000574_480 0.0847611839 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_000058_060 0.0848431074 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
12 Hb_004635_100 0.0853864239 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
13 Hb_000349_290 0.0855755706 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
14 Hb_011214_020 0.0871999133 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
15 Hb_001047_230 0.0873397276 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000240_090 0.0879135557 - - Rab5 [Hevea brasiliensis]
17 Hb_000120_680 0.0884170671 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
18 Hb_003656_070 0.0887465585 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
19 Hb_000009_460 0.0889444018 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001519_050 0.0897995347 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_011173_050 Hb_011173_050 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_005568_120--Hb_000373_130 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_000111_330--Hb_029866_060 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000368_010--Hb_000347_410 Hb_000368_010--Hb_000111_330 Hb_001059_030 Hb_001059_030 Hb_000368_010--Hb_001059_030 Hb_002851_020 Hb_002851_020 Hb_000368_010--Hb_002851_020 Hb_000368_010--Hb_004586_320 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.02 35.0437 18.3658 27.9674 26.4552 31.0479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.74 95.3558 72.9917 29.7647 20.2077

CAGE analysis