Hb_011174_010

Information

Type -
Description -
Location Contig11174: 3492-6347
Sequence    

Annotation

kegg
ID tcc:TCM_017190
description Enhancer of yellow 2 isoform 1
nr
ID KDP46282.1
description hypothetical protein JCGZ_10122 [Jatropha curcas]
swissprot
ID Q6NQ54
description Transcription and mRNA export factor SUS1 OS=Arabidopsis thaliana GN=SUS1 PE=3 SV=1
trembl
ID A0A067LD30
description Transcription and mRNA export factor SUS1 OS=Jatropha curcas GN=SUS1 PE=3 SV=1
Gene Ontology
ID GO:0000124
description transcription and mrna export factor sus1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03563: 4277-4608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_010 0.0 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
2 Hb_002272_260 0.0933882538 - - -
3 Hb_000622_100 0.1008666096 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
4 Hb_004117_180 0.1067805339 - - -
5 Hb_011016_090 0.1100276275 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
6 Hb_073367_010 0.1124397673 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
7 Hb_000771_100 0.1134347236 - - Os06g0527300 [Oryza sativa Japonica Group]
8 Hb_000189_530 0.115616273 - - 40S ribosomal protein S24B [Hevea brasiliensis]
9 Hb_000617_320 0.1166422448 - - 40S ribosomal protein S21B [Hevea brasiliensis]
10 Hb_000101_090 0.1186888639 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
11 Hb_102156_010 0.1204421856 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007166_050 0.1213458492 - - -
13 Hb_000193_350 0.1245200233 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
14 Hb_003874_020 0.1265120826 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
15 Hb_000065_080 0.1266906409 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
16 Hb_000752_060 0.1274435545 - - expressed protein, putative [Ricinus communis]
17 Hb_002368_040 0.1287546989 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
18 Hb_004724_100 0.1305058178 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
19 Hb_004453_150 0.1306315396 - - BnaC02g13240D [Brassica napus]
20 Hb_000347_340 0.1321580542 - - ring finger, putative [Ricinus communis]

Gene co-expression network

sample Hb_011174_010 Hb_011174_010 Hb_002272_260 Hb_002272_260 Hb_011174_010--Hb_002272_260 Hb_000622_100 Hb_000622_100 Hb_011174_010--Hb_000622_100 Hb_004117_180 Hb_004117_180 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_073367_010 Hb_073367_010 Hb_011174_010--Hb_073367_010 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_004453_150 Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_000622_100--Hb_073367_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_119583_010 Hb_119583_010 Hb_000622_100--Hb_119583_010 Hb_000193_350 Hb_000193_350 Hb_004117_180--Hb_000193_350 Hb_004117_180--Hb_011016_090 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_102156_010 Hb_102156_010 Hb_004117_180--Hb_102156_010 Hb_004117_180--Hb_002272_260 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_011016_090--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_000065_080 Hb_000065_080 Hb_073367_010--Hb_000065_080 Hb_004712_180 Hb_004712_180 Hb_073367_010--Hb_004712_180 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000771_100--Hb_000676_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
304.027 30.5174 48.6413 148.038 189.324 534.069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
400.099 357.151 92.1365 57.5822 19.762

CAGE analysis