Hb_011174_030

Information

Type -
Description -
Location Contig11174: 15182-18970
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03566: 15645-15991 , PASA_asmbl_03568: 16608-29188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_030 0.0 - - -
2 Hb_001195_430 0.0933903349 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002259_180 0.2343385351 - - -
4 Hb_002435_020 0.2365327851 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_006355_120 0.2366877546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001410_050 0.2375661973 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_000069_580 0.2456413962 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008221_020 0.2558463086 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
9 Hb_005946_180 0.2884832252 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
10 Hb_011505_010 0.289984596 - - -
11 Hb_000139_210 0.293432628 - - -
12 Hb_000264_330 0.2949764637 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
13 Hb_004970_080 0.3002900009 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
14 Hb_001950_130 0.3017287991 - - -
15 Hb_010534_030 0.3024937982 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_000752_030 0.3027480629 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
17 Hb_010815_050 0.3096827606 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
18 Hb_001246_050 0.3208732114 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
19 Hb_001190_050 0.3524317268 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
20 Hb_011344_060 0.3548872242 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_030 Hb_011174_030 Hb_001195_430 Hb_001195_430 Hb_011174_030--Hb_001195_430 Hb_002259_180 Hb_002259_180 Hb_011174_030--Hb_002259_180 Hb_002435_020 Hb_002435_020 Hb_011174_030--Hb_002435_020 Hb_006355_120 Hb_006355_120 Hb_011174_030--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_011174_030--Hb_001410_050 Hb_000069_580 Hb_000069_580 Hb_011174_030--Hb_000069_580 Hb_011505_010 Hb_011505_010 Hb_001195_430--Hb_011505_010 Hb_010815_050 Hb_010815_050 Hb_001195_430--Hb_010815_050 Hb_001195_430--Hb_002435_020 Hb_001195_430--Hb_000069_580 Hb_001195_430--Hb_002259_180 Hb_002259_180--Hb_006355_120 Hb_002259_180--Hb_001410_050 Hb_002259_180--Hb_002435_020 Hb_002259_180--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002259_180--Hb_008221_020 Hb_005946_180 Hb_005946_180 Hb_002259_180--Hb_005946_180 Hb_002435_020--Hb_000069_580 Hb_002435_020--Hb_008221_020 Hb_002435_020--Hb_006355_120 Hb_002435_020--Hb_001410_050 Hb_001246_050 Hb_001246_050 Hb_002435_020--Hb_001246_050 Hb_006355_120--Hb_001410_050 Hb_006355_120--Hb_000069_580 Hb_006355_120--Hb_005946_180 Hb_000139_210 Hb_000139_210 Hb_006355_120--Hb_000139_210 Hb_001410_050--Hb_000069_580 Hb_001410_050--Hb_005946_180 Hb_001410_050--Hb_000139_210 Hb_000069_580--Hb_008221_020 Hb_000069_580--Hb_001246_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.119086 0 0 0.0266867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109205 0 0 0

CAGE analysis