Hb_011174_040

Information

Type -
Description -
Location Contig11174: 15746-17238
Sequence    

Annotation

kegg
ID rcu:RCOM_1677190
description hypothetical protein
nr
ID XP_002509519.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677190 PE=4 SV=1
Gene Ontology
ID GO:0031225
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03567: 16609-16915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003050_360 0.1027889196 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
3 Hb_000076_030 0.1064407575 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
4 Hb_007101_260 0.1119060257 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
5 Hb_048476_140 0.1180567245 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
6 Hb_010672_050 0.1208154542 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
7 Hb_010381_040 0.1211939473 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_022693_110 0.1218305627 - - phosphate transporter [Manihot esculenta]
9 Hb_001123_310 0.1238574863 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_000689_050 0.1245008638 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004052_100 0.124833359 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
12 Hb_001180_010 0.1296042195 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
13 Hb_001377_530 0.130752958 - - NC domain-containing family protein [Populus trichocarpa]
14 Hb_003299_020 0.1312761344 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
15 Hb_000465_410 0.1323408946 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000207_350 0.135749561 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
17 Hb_161396_010 0.1378611857 - - hypothetical protein F383_26394 [Gossypium arboreum]
18 Hb_002701_070 0.1380121685 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
19 Hb_003398_040 0.1385818556 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
20 Hb_001408_170 0.139404402 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_040 Hb_011174_040 Hb_003050_360 Hb_003050_360 Hb_011174_040--Hb_003050_360 Hb_000076_030 Hb_000076_030 Hb_011174_040--Hb_000076_030 Hb_007101_260 Hb_007101_260 Hb_011174_040--Hb_007101_260 Hb_048476_140 Hb_048476_140 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_010381_040 Hb_010381_040 Hb_011174_040--Hb_010381_040 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_000076_030--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_000076_030--Hb_001180_010 Hb_161396_010 Hb_161396_010 Hb_000076_030--Hb_161396_010 Hb_022693_110 Hb_022693_110 Hb_000076_030--Hb_022693_110 Hb_042083_030 Hb_042083_030 Hb_000076_030--Hb_042083_030 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_048476_140--Hb_161396_010 Hb_005333_080 Hb_005333_080 Hb_010672_050--Hb_005333_080 Hb_003299_020 Hb_003299_020 Hb_010672_050--Hb_003299_020 Hb_001019_160 Hb_001019_160 Hb_010672_050--Hb_001019_160 Hb_012760_090 Hb_012760_090 Hb_010672_050--Hb_012760_090 Hb_000735_060 Hb_000735_060 Hb_010672_050--Hb_000735_060 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293492 0.223568 1.51743 1.3366 0.0659515 0.0470064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537559 0.211384 0.155134 0.493627 0.861861

CAGE analysis