Hb_011174_050

Information

Type -
Description -
Location Contig11174: 18411-22353
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at5g56310-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_050 0.0 - - -
2 Hb_028872_050 0.1736586321 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
3 Hb_006816_290 0.175389581 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
4 Hb_005657_010 0.1847339235 - - -
5 Hb_001416_050 0.2028766516 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
6 Hb_000300_380 0.2048249066 - - -
7 Hb_001416_040 0.2099955894 - - acid phosphatase, putative [Ricinus communis]
8 Hb_003751_110 0.2100258694 - - unknown [Lotus japonicus]
9 Hb_003125_050 0.2135972381 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
10 Hb_002400_270 0.2180367887 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
11 Hb_002111_050 0.218876834 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
12 Hb_000327_240 0.2195393909 - - PREDICTED: interaptin-like [Jatropha curcas]
13 Hb_001341_040 0.2232597242 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
14 Hb_017438_020 0.2241083933 - - -
15 Hb_000984_180 0.2245591671 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
16 Hb_001452_140 0.2258126579 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
17 Hb_034083_010 0.2261663441 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019973_030 0.2279063022 - - -
19 Hb_001001_160 0.2283167961 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
20 Hb_000300_530 0.2296517691 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]

Gene co-expression network

sample Hb_011174_050 Hb_011174_050 Hb_028872_050 Hb_028872_050 Hb_011174_050--Hb_028872_050 Hb_006816_290 Hb_006816_290 Hb_011174_050--Hb_006816_290 Hb_005657_010 Hb_005657_010 Hb_011174_050--Hb_005657_010 Hb_001416_050 Hb_001416_050 Hb_011174_050--Hb_001416_050 Hb_000300_380 Hb_000300_380 Hb_011174_050--Hb_000300_380 Hb_001416_040 Hb_001416_040 Hb_011174_050--Hb_001416_040 Hb_002111_050 Hb_002111_050 Hb_028872_050--Hb_002111_050 Hb_011224_080 Hb_011224_080 Hb_028872_050--Hb_011224_080 Hb_002659_140 Hb_002659_140 Hb_028872_050--Hb_002659_140 Hb_004650_070 Hb_004650_070 Hb_028872_050--Hb_004650_070 Hb_000352_110 Hb_000352_110 Hb_028872_050--Hb_000352_110 Hb_028872_050--Hb_006816_290 Hb_006816_290--Hb_001416_040 Hb_000327_240 Hb_000327_240 Hb_006816_290--Hb_000327_240 Hb_002400_270 Hb_002400_270 Hb_006816_290--Hb_002400_270 Hb_006816_290--Hb_002111_050 Hb_001001_160 Hb_001001_160 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010 Hb_011174_070 Hb_011174_070 Hb_005657_010--Hb_011174_070 Hb_003125_050 Hb_003125_050 Hb_005657_010--Hb_003125_050 Hb_001767_010 Hb_001767_010 Hb_005657_010--Hb_001767_010 Hb_005657_010--Hb_001001_160 Hb_011609_190 Hb_011609_190 Hb_005657_010--Hb_011609_190 Hb_003747_240 Hb_003747_240 Hb_005657_010--Hb_003747_240 Hb_006111_070 Hb_006111_070 Hb_001416_050--Hb_006111_070 Hb_000540_130 Hb_000540_130 Hb_001416_050--Hb_000540_130 Hb_120762_010 Hb_120762_010 Hb_001416_050--Hb_120762_010 Hb_000808_080 Hb_000808_080 Hb_001416_050--Hb_000808_080 Hb_001416_050--Hb_006816_290 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_001416_040--Hb_000327_240 Hb_000984_180 Hb_000984_180 Hb_001416_040--Hb_000984_180 Hb_001416_040--Hb_002400_270 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231286 0.0513462 0.0153801 0 0.540547 0.148961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235218 0.0740032 0.341829 0.0297186 0.152021

CAGE analysis