Hb_011174_070

Information

Type -
Description -
Location Contig11174: 27261-32357
Sequence    

Annotation

kegg
ID vvi:100246270
description pentatricopeptide repeat-containing protein At5g06540-like
nr
ID XP_012070442.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
swissprot
ID Q9FG16
description Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1
trembl
ID A0A067LN85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10125 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03570: 31768-32163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
2 Hb_003057_120 0.070507683 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_000427_030 0.0781624296 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000387_080 0.0817102664 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
5 Hb_000057_060 0.0859750888 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
6 Hb_000805_090 0.0866777647 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
7 Hb_000025_480 0.0885714286 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
8 Hb_003638_030 0.0916643883 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
9 Hb_002357_040 0.0927417897 - - latex-abundant protein [Hevea brasiliensis]
10 Hb_002903_070 0.0928488605 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
11 Hb_001366_220 0.0935135604 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001981_090 0.09550463 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_098993_010 0.0965270004 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
14 Hb_026048_100 0.0979344129 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
15 Hb_114684_020 0.0983199294 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_007760_030 0.0983858995 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_005357_150 0.0985299712 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_003747_240 0.0993080268 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
19 Hb_001767_010 0.0996903235 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_003404_030 0.1003584071 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_070 Hb_011174_070 Hb_003057_120 Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_000387_080 Hb_000387_080 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000805_090 Hb_000805_090 Hb_011174_070--Hb_000805_090 Hb_000025_480 Hb_000025_480 Hb_011174_070--Hb_000025_480 Hb_003057_120--Hb_000387_080 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_003057_120--Hb_000805_090 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000427_030--Hb_000025_480 Hb_000427_030--Hb_003057_120 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000805_090--Hb_002357_040 Hb_000809_040 Hb_000809_040 Hb_000805_090--Hb_000809_040 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96202 1.34064 0.60933 0.604258 8.49146 7.25197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18958 4.77124 10.4435 1.43971 0.767626

CAGE analysis