Hb_011174_100

Information

Type -
Description -
Location Contig11174: 50908-52359
Sequence    

Annotation

kegg
ID rcu:RCOM_1677360
description ubiquitin-protein ligase, putative
nr
ID XP_002509526.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9LI89
description F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1
trembl
ID B9RBJ2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1677360 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box kelch-repeat protein at3g27150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_100 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_005542_110 0.1050197393 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
3 Hb_000876_050 0.1243852243 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
4 Hb_007709_010 0.124661355 - - -
5 Hb_000512_040 0.1424753713 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_001454_160 0.1440643868 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
7 Hb_000684_010 0.1440738283 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001769_030 0.1484056978 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
9 Hb_000221_170 0.152818164 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
10 Hb_006718_040 0.1547983262 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
11 Hb_010813_030 0.1557138096 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
12 Hb_004055_100 0.1585698239 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
13 Hb_003469_010 0.1602757021 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_001675_130 0.160421034 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
15 Hb_005333_100 0.1628282233 - - conserved hypothetical protein [Ricinus communis]
16 Hb_120268_010 0.162954567 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
17 Hb_022108_010 0.1633791537 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
18 Hb_000120_980 0.1639198072 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
19 Hb_002555_020 0.1645627661 - - Receptor-like protein kinase [Medicago truncatula]
20 Hb_000521_300 0.1660699525 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_011174_100 Hb_011174_100 Hb_005542_110 Hb_005542_110 Hb_011174_100--Hb_005542_110 Hb_000876_050 Hb_000876_050 Hb_011174_100--Hb_000876_050 Hb_007709_010 Hb_007709_010 Hb_011174_100--Hb_007709_010 Hb_000512_040 Hb_000512_040 Hb_011174_100--Hb_000512_040 Hb_001454_160 Hb_001454_160 Hb_011174_100--Hb_001454_160 Hb_000684_010 Hb_000684_010 Hb_011174_100--Hb_000684_010 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_005542_110--Hb_000684_010 Hb_005333_100 Hb_005333_100 Hb_005542_110--Hb_005333_100 Hb_005542_110--Hb_000876_050 Hb_000976_060 Hb_000976_060 Hb_005542_110--Hb_000976_060 Hb_000221_170 Hb_000221_170 Hb_000876_050--Hb_000221_170 Hb_000876_050--Hb_000684_010 Hb_000876_050--Hb_005333_100 Hb_000120_980 Hb_000120_980 Hb_000876_050--Hb_000120_980 Hb_010813_030 Hb_010813_030 Hb_000876_050--Hb_010813_030 Hb_007709_010--Hb_000684_010 Hb_000343_260 Hb_000343_260 Hb_007709_010--Hb_000343_260 Hb_007709_010--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_007709_010--Hb_000086_370 Hb_007709_010--Hb_000876_050 Hb_000512_040--Hb_000221_170 Hb_000512_040--Hb_000876_050 Hb_029508_030 Hb_029508_030 Hb_000512_040--Hb_029508_030 Hb_001709_070 Hb_001709_070 Hb_000512_040--Hb_001709_070 Hb_004162_040 Hb_004162_040 Hb_000512_040--Hb_004162_040 Hb_002555_020 Hb_002555_020 Hb_001454_160--Hb_002555_020 Hb_018563_040 Hb_018563_040 Hb_001454_160--Hb_018563_040 Hb_001454_160--Hb_000976_060 Hb_001454_160--Hb_005542_110 Hb_152718_010 Hb_152718_010 Hb_001454_160--Hb_152718_010 Hb_001489_030 Hb_001489_030 Hb_001454_160--Hb_001489_030 Hb_000684_010--Hb_000120_980 Hb_000684_010--Hb_005333_100 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353909 4.11424 0.314184 0.164441 0.0418391 0.069833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.025508 0 3.09667 1.38554

CAGE analysis