Hb_011179_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig11179: 7064-7705
Sequence    

Annotation

kegg
ID rcu:RCOM_1608410
description Ethylene-responsive transcription factor, putative
nr
ID KDP28854.1
description hypothetical protein JCGZ_14625 [Jatropha curcas]
swissprot
ID Q8L9K1
description Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2
trembl
ID A0A067KAL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14625 PE=4 SV=1
Gene Ontology
ID GO:0001101
description ethylene-responsive transcription factor 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011179_010 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
2 Hb_030385_030 0.0034225589 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
3 Hb_000173_040 0.0060304795 - - putative xylanase inhibitor, partial [Triticum aestivum]
4 Hb_154114_040 0.0067372268 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
5 Hb_000193_040 0.0093116281 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_022862_010 0.01134651 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
7 Hb_000769_040 0.0151396825 - - hypothetical protein VITISV_028082 [Vitis vinifera]
8 Hb_004117_070 0.0156883308 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
9 Hb_012675_030 0.0199243874 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
10 Hb_090511_010 0.0202314227 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
11 Hb_130862_010 0.0224815714 - - purine permease, putative [Ricinus communis]
12 Hb_001926_050 0.0237127613 - - PREDICTED: peroxidase 19 [Jatropha curcas]
13 Hb_105767_030 0.0317358842 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007975_070 0.0331391063 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
15 Hb_004722_050 0.0336456631 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
16 Hb_000691_060 0.0359060913 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
17 Hb_000417_240 0.0380801711 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
18 Hb_003995_040 0.038220154 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
19 Hb_000173_070 0.0388999147 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
20 Hb_000307_080 0.0398906419 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011179_010 Hb_011179_010 Hb_030385_030 Hb_030385_030 Hb_011179_010--Hb_030385_030 Hb_000173_040 Hb_000173_040 Hb_011179_010--Hb_000173_040 Hb_154114_040 Hb_154114_040 Hb_011179_010--Hb_154114_040 Hb_000193_040 Hb_000193_040 Hb_011179_010--Hb_000193_040 Hb_022862_010 Hb_022862_010 Hb_011179_010--Hb_022862_010 Hb_000769_040 Hb_000769_040 Hb_011179_010--Hb_000769_040 Hb_030385_030--Hb_000173_040 Hb_030385_030--Hb_154114_040 Hb_004117_070 Hb_004117_070 Hb_030385_030--Hb_004117_070 Hb_030385_030--Hb_000193_040 Hb_030385_030--Hb_022862_010 Hb_000173_040--Hb_154114_040 Hb_000173_040--Hb_000193_040 Hb_000173_040--Hb_022862_010 Hb_000173_040--Hb_000769_040 Hb_154114_040--Hb_000193_040 Hb_154114_040--Hb_022862_010 Hb_154114_040--Hb_000769_040 Hb_000193_040--Hb_022862_010 Hb_000193_040--Hb_000769_040 Hb_012675_030 Hb_012675_030 Hb_000193_040--Hb_012675_030 Hb_022862_010--Hb_000769_040 Hb_022862_010--Hb_012675_030 Hb_090511_010 Hb_090511_010 Hb_022862_010--Hb_090511_010 Hb_000769_040--Hb_012675_030 Hb_000769_040--Hb_090511_010 Hb_130862_010 Hb_130862_010 Hb_000769_040--Hb_130862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.189183 0.0410663 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis