Hb_011179_040

Information

Type -
Description -
Location Contig11179: 23575-24572
Sequence    

Annotation

kegg
ID rcu:RCOM_0175450
description hypothetical protein
nr
ID XP_002527510.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011179_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008887_010 0.1717155956 - - -
3 Hb_007218_090 0.211057492 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
4 Hb_003108_010 0.2114984977 - - -
5 Hb_040562_010 0.2577969566 - - -
6 Hb_027998_030 0.2676565871 - - laccase, putative [Ricinus communis]
7 Hb_156144_020 0.2754904775 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
8 Hb_000189_420 0.2789970381 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
9 Hb_000101_210 0.2848191203 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
10 Hb_000548_010 0.291502402 - - -
11 Hb_004307_040 0.2919417639 - - -
12 Hb_000211_070 0.2954227528 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
13 Hb_000211_080 0.2963361182 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_004460_020 0.2985208592 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_000580_060 0.3004570143 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
16 Hb_172256_010 0.3006966094 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_001935_180 0.3011784929 - - hypothetical protein VITISV_028082 [Vitis vinifera]
18 Hb_001811_060 0.3014004224 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
19 Hb_000175_530 0.3030135062 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
20 Hb_001146_070 0.3087495025 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_011179_040 Hb_011179_040 Hb_008887_010 Hb_008887_010 Hb_011179_040--Hb_008887_010 Hb_007218_090 Hb_007218_090 Hb_011179_040--Hb_007218_090 Hb_003108_010 Hb_003108_010 Hb_011179_040--Hb_003108_010 Hb_040562_010 Hb_040562_010 Hb_011179_040--Hb_040562_010 Hb_027998_030 Hb_027998_030 Hb_011179_040--Hb_027998_030 Hb_156144_020 Hb_156144_020 Hb_011179_040--Hb_156144_020 Hb_008887_010--Hb_007218_090 Hb_075570_010 Hb_075570_010 Hb_008887_010--Hb_075570_010 Hb_001935_180 Hb_001935_180 Hb_008887_010--Hb_001935_180 Hb_000007_310 Hb_000007_310 Hb_008887_010--Hb_000007_310 Hb_008887_010--Hb_027998_030 Hb_182310_010 Hb_182310_010 Hb_007218_090--Hb_182310_010 Hb_001241_040 Hb_001241_040 Hb_007218_090--Hb_001241_040 Hb_000563_280 Hb_000563_280 Hb_007218_090--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_007218_090--Hb_067345_050 Hb_003108_010--Hb_040562_010 Hb_000548_010 Hb_000548_010 Hb_003108_010--Hb_000548_010 Hb_003320_030 Hb_003320_030 Hb_003108_010--Hb_003320_030 Hb_003108_010--Hb_156144_020 Hb_002483_020 Hb_002483_020 Hb_003108_010--Hb_002483_020 Hb_057655_010 Hb_057655_010 Hb_040562_010--Hb_057655_010 Hb_001811_060 Hb_001811_060 Hb_040562_010--Hb_001811_060 Hb_002307_130 Hb_002307_130 Hb_040562_010--Hb_002307_130 Hb_000340_480 Hb_000340_480 Hb_040562_010--Hb_000340_480 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_156144_020--Hb_001892_160 Hb_156144_020--Hb_000175_530 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_156144_020--Hb_007634_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.689905 0 0 0 0.912175 0.739622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122901 0 0 0.399531 0

CAGE analysis