Hb_011200_010

Information

Type -
Description -
Location Contig11200: 12340-12922
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011200_010 0.0 - - -
2 Hb_006794_010 0.1078850664 - - elicitor-responsive protein [Hevea brasiliensis]
3 Hb_005107_020 0.1497189161 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
4 Hb_022614_010 0.1655779882 - - -
5 Hb_013394_100 0.1656129147 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
6 Hb_012675_080 0.1756876736 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
7 Hb_006162_020 0.1769359622 - - -
8 Hb_000292_080 0.1783841585 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
9 Hb_000034_090 0.1789896561 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
10 Hb_002016_030 0.1821042276 - - conserved hypothetical protein [Ricinus communis]
11 Hb_162090_010 0.1942878879 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
12 Hb_000789_150 0.196399922 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
13 Hb_108227_010 0.2018843169 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
14 Hb_021888_040 0.2033409564 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
15 Hb_017014_020 0.204252824 - - -
16 Hb_007273_020 0.2055490167 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
17 Hb_099298_010 0.2063034461 - - -
18 Hb_002079_040 0.2084679629 - - hypothetical protein VITISV_018542 [Vitis vinifera]
19 Hb_183522_010 0.2102687915 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_000025_080 0.213668812 - - -

Gene co-expression network

sample Hb_011200_010 Hb_011200_010 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_006794_010--Hb_005107_020 Hb_000025_080 Hb_000025_080 Hb_006794_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_006794_010--Hb_009119_010 Hb_006794_010--Hb_006162_020 Hb_006794_010--Hb_022614_010 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_005107_020--Hb_006162_020 Hb_005107_020--Hb_012675_080 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_162090_010 Hb_162090_010 Hb_022614_010--Hb_162090_010 Hb_022614_010--Hb_006162_020 Hb_017014_020 Hb_017014_020 Hb_022614_010--Hb_017014_020 Hb_022614_010--Hb_005107_020 Hb_022614_010--Hb_013394_100 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_006162_020--Hb_162090_010 Hb_006162_020--Hb_017014_020 Hb_006162_020--Hb_000034_090 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6927 4.8612 2.84786 283.505 8.49174 172.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.7008 35.6427 4.87648 7.57577 2.84179

CAGE analysis