Hb_011206_010

Information

Type -
Description -
Location Contig11206: 8550-9843
Sequence    

Annotation

kegg
ID vvi:100264445
description something about silencing protein 10
nr
ID XP_002273791.1
description PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HAX1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03641: 8629-10081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011206_010 0.0 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
2 Hb_002815_060 0.0958930461 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
3 Hb_001731_020 0.1357046029 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_000213_070 0.136799019 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
5 Hb_000085_090 0.1386138415 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
6 Hb_171788_010 0.1396689413 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
7 Hb_019053_020 0.1426265687 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
8 Hb_081879_030 0.144550493 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
9 Hb_042487_010 0.1456449936 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
10 Hb_000441_160 0.1458124807 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_037793_010 0.146102268 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
12 Hb_006816_410 0.1479379267 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
13 Hb_003157_030 0.1489583089 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
14 Hb_001278_060 0.149050874 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000340_160 0.1497507543 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_002903_080 0.1498923179 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
17 Hb_083043_010 0.1503527014 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_003581_020 0.1520591077 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
19 Hb_003388_100 0.1540706856 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
20 Hb_006588_050 0.1564308264 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_011206_010 Hb_011206_010 Hb_002815_060 Hb_002815_060 Hb_011206_010--Hb_002815_060 Hb_001731_020 Hb_001731_020 Hb_011206_010--Hb_001731_020 Hb_000213_070 Hb_000213_070 Hb_011206_010--Hb_000213_070 Hb_000085_090 Hb_000085_090 Hb_011206_010--Hb_000085_090 Hb_171788_010 Hb_171788_010 Hb_011206_010--Hb_171788_010 Hb_019053_020 Hb_019053_020 Hb_011206_010--Hb_019053_020 Hb_002742_070 Hb_002742_070 Hb_002815_060--Hb_002742_070 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120 Hb_001731_020--Hb_031069_020 Hb_001489_070 Hb_001489_070 Hb_001731_020--Hb_001489_070 Hb_078477_040 Hb_078477_040 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_001278_060 Hb_001278_060 Hb_000213_070--Hb_001278_060 Hb_006002_030 Hb_006002_030 Hb_000213_070--Hb_006002_030 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_007668_020 Hb_007668_020 Hb_000213_070--Hb_007668_020 Hb_000213_070--Hb_078477_040 Hb_001492_010 Hb_001492_010 Hb_000085_090--Hb_001492_010 Hb_003050_370 Hb_003050_370 Hb_000085_090--Hb_003050_370 Hb_000703_210 Hb_000703_210 Hb_000085_090--Hb_000703_210 Hb_000959_250 Hb_000959_250 Hb_000085_090--Hb_000959_250 Hb_000085_090--Hb_000213_070 Hb_139859_010 Hb_139859_010 Hb_171788_010--Hb_139859_010 Hb_083043_010 Hb_083043_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_030328_010 Hb_030328_010 Hb_171788_010--Hb_030328_010 Hb_000486_060 Hb_000486_060 Hb_171788_010--Hb_000486_060 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_126295_010 Hb_126295_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0512 18.7824 12.6481 18.464 35.3629 79.1311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3625 5.2755 9.95083 32.4299 3.73335

CAGE analysis