Hb_011206_020

Information

Type -
Description -
Location Contig11206: 14084-17587
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011206_020 0.0 - - -
2 Hb_000098_300 0.2111512946 - - -
3 Hb_068014_010 0.2165791714 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
4 Hb_052402_010 0.2201662431 - - -
5 Hb_007083_020 0.2318208571 - - hypothetical protein F775_15403 [Aegilops tauschii]
6 Hb_000740_120 0.2322344925 - - -
7 Hb_131652_010 0.2343817623 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
8 Hb_019053_010 0.2378033794 - - -
9 Hb_033385_010 0.2392957509 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
10 Hb_169170_010 0.2429595907 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
11 Hb_141296_010 0.2457323362 - - -
12 Hb_009119_020 0.2469771833 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
13 Hb_005318_020 0.2470507574 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
14 Hb_002815_050 0.2472484427 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
15 Hb_022891_010 0.248646756 - - chitinase-like protein [Hevea brasiliensis]
16 Hb_001222_040 0.2492390712 - - -
17 Hb_007333_040 0.2524810115 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
18 Hb_007188_030 0.2538591875 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
19 Hb_116632_010 0.2542624037 - - unnamed protein product [Vitis vinifera]
20 Hb_000679_200 0.2556849346 - - EIN3-binding F box protein 1 [Theobroma cacao]

Gene co-expression network

sample Hb_011206_020 Hb_011206_020 Hb_000098_300 Hb_000098_300 Hb_011206_020--Hb_000098_300 Hb_068014_010 Hb_068014_010 Hb_011206_020--Hb_068014_010 Hb_052402_010 Hb_052402_010 Hb_011206_020--Hb_052402_010 Hb_007083_020 Hb_007083_020 Hb_011206_020--Hb_007083_020 Hb_000740_120 Hb_000740_120 Hb_011206_020--Hb_000740_120 Hb_131652_010 Hb_131652_010 Hb_011206_020--Hb_131652_010 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_000679_200 Hb_000679_200 Hb_000098_300--Hb_000679_200 Hb_022891_010 Hb_022891_010 Hb_000098_300--Hb_022891_010 Hb_007333_040 Hb_007333_040 Hb_000098_300--Hb_007333_040 Hb_060391_010 Hb_060391_010 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_052402_010--Hb_169170_010 Hb_005318_020 Hb_005318_020 Hb_052402_010--Hb_005318_020 Hb_000248_030 Hb_000248_030 Hb_052402_010--Hb_000248_030 Hb_177103_010 Hb_177103_010 Hb_052402_010--Hb_177103_010 Hb_000248_010 Hb_000248_010 Hb_052402_010--Hb_000248_010 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_000740_120--Hb_052402_010 Hb_000740_120--Hb_131652_010 Hb_033044_010 Hb_033044_010 Hb_000740_120--Hb_033044_010 Hb_002942_180 Hb_002942_180 Hb_000740_120--Hb_002942_180 Hb_130367_010 Hb_130367_010 Hb_000740_120--Hb_130367_010 Hb_131652_010--Hb_002942_180 Hb_008226_110 Hb_008226_110 Hb_131652_010--Hb_008226_110 Hb_131652_010--Hb_000098_300 Hb_005392_100 Hb_005392_100 Hb_131652_010--Hb_005392_100 Hb_006971_080 Hb_006971_080 Hb_131652_010--Hb_006971_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216789 0.479597 0.204301 3.74667 0.519048 7.4775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.930349 0.121798 0.809781 3.01465 0

CAGE analysis