Hb_011214_020

Information

Type -
Description -
Location Contig11214: 3948-16123
Sequence    

Annotation

kegg
ID vvi:100250662
description RNA-binding protein 5-B
nr
ID XP_012074699.1
description PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
swissprot
ID A4IGK4
description RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
trembl
ID A0A067KL75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10480 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 5-b isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03647: 5732-16097 , PASA_asmbl_03649: 14907-15343 , PASA_asmbl_03650: 8825-14137 , PASA_asmbl_03651: 6739-6840
cDNA
(Sanger)
(ID:Location)		 008_J06.ab1: 14910-16097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_020 0.0 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
2 Hb_000732_130 0.0526682467 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
3 Hb_007416_320 0.0732375021 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002878_020 0.0777079421 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_001545_170 0.0865152798 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_011173_050 0.0871999133 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
7 Hb_005463_040 0.0873195455 - - signal transducer, putative [Ricinus communis]
8 Hb_000251_130 0.0886476314 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
9 Hb_000384_100 0.0895369718 - - hydrolase, putative [Ricinus communis]
10 Hb_004994_140 0.0896981929 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
11 Hb_008221_140 0.0899879423 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
12 Hb_001663_050 0.0904484595 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
13 Hb_021596_040 0.0910020016 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005568_120 0.0910918249 - - Prephenate dehydratase [Hevea brasiliensis]
15 Hb_000058_060 0.0913090134 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
16 Hb_012114_040 0.0913182972 - - DNA binding protein, putative [Ricinus communis]
17 Hb_001699_130 0.0919548029 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
18 Hb_004453_050 0.0925321049 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
19 Hb_086639_030 0.0930918583 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_012490_070 0.0958298035 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011214_020 Hb_011214_020 Hb_000732_130 Hb_000732_130 Hb_011214_020--Hb_000732_130 Hb_007416_320 Hb_007416_320 Hb_011214_020--Hb_007416_320 Hb_002878_020 Hb_002878_020 Hb_011214_020--Hb_002878_020 Hb_001545_170 Hb_001545_170 Hb_011214_020--Hb_001545_170 Hb_011173_050 Hb_011173_050 Hb_011214_020--Hb_011173_050 Hb_005463_040 Hb_005463_040 Hb_011214_020--Hb_005463_040 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000384_100 Hb_000384_100 Hb_000732_130--Hb_000384_100 Hb_008221_140 Hb_008221_140 Hb_000732_130--Hb_008221_140 Hb_000732_130--Hb_002878_020 Hb_004306_100 Hb_004306_100 Hb_000732_130--Hb_004306_100 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_002878_020--Hb_001633_210 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_005463_040--Hb_008221_140 Hb_005463_040--Hb_086639_030 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_005463_040--Hb_000384_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2406 18.1434 5.84214 11.2085 14.223 17.8346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7096 42.4374 29.4841 21.1705 14.0663

CAGE analysis