Hb_011214_120

Information

Type -
Description -
Location Contig11214: 97683-101516
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02030g
description hypothetical protein
nr
ID XP_012074710.1
description PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FLL5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02030g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03662: 97710-98933 , PASA_asmbl_03663: 99059-99546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_120 0.0 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
2 Hb_001959_030 0.1500314152 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000589_210 0.154626142 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
4 Hb_098030_010 0.1625136509 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
5 Hb_000364_200 0.1701289925 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_002016_020 0.1710165076 - - RALFL33, putative [Ricinus communis]
7 Hb_014834_020 0.1852715495 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
8 Hb_002597_010 0.1887399205 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
9 Hb_080147_060 0.1913167738 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
10 Hb_000194_080 0.197351265 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
11 Hb_000347_230 0.1976829822 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
12 Hb_001758_120 0.1998582318 - - unnamed protein product [Vitis vinifera]
13 Hb_001006_310 0.2028921395 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
14 Hb_002809_020 0.2051663403 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
15 Hb_001623_400 0.2063649723 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002301_420 0.2077029383 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
17 Hb_000544_130 0.2093242214 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
18 Hb_012368_080 0.2093684218 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
19 Hb_003205_030 0.2095058681 - - Pectinesterase inhibitor, putative [Ricinus communis]
20 Hb_001268_330 0.2095417619 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011214_120 Hb_011214_120 Hb_001959_030 Hb_001959_030 Hb_011214_120--Hb_001959_030 Hb_000589_210 Hb_000589_210 Hb_011214_120--Hb_000589_210 Hb_098030_010 Hb_098030_010 Hb_011214_120--Hb_098030_010 Hb_000364_200 Hb_000364_200 Hb_011214_120--Hb_000364_200 Hb_002016_020 Hb_002016_020 Hb_011214_120--Hb_002016_020 Hb_014834_020 Hb_014834_020 Hb_011214_120--Hb_014834_020 Hb_002042_200 Hb_002042_200 Hb_001959_030--Hb_002042_200 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_001959_030--Hb_002016_020 Hb_018133_110 Hb_018133_110 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480 Hb_002597_010 Hb_002597_010 Hb_000589_210--Hb_002597_010 Hb_000589_210--Hb_025254_020 Hb_080147_060 Hb_080147_060 Hb_000589_210--Hb_080147_060 Hb_007545_140 Hb_007545_140 Hb_000589_210--Hb_007545_140 Hb_000589_210--Hb_001959_030 Hb_012368_080 Hb_012368_080 Hb_098030_010--Hb_012368_080 Hb_002809_020 Hb_002809_020 Hb_098030_010--Hb_002809_020 Hb_008418_010 Hb_008418_010 Hb_098030_010--Hb_008418_010 Hb_006637_040 Hb_006637_040 Hb_098030_010--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_098030_010--Hb_018591_010 Hb_003768_100 Hb_003768_100 Hb_098030_010--Hb_003768_100 Hb_000364_200--Hb_000589_210 Hb_000364_200--Hb_014834_020 Hb_000915_070 Hb_000915_070 Hb_000364_200--Hb_000915_070 Hb_000364_200--Hb_001959_030 Hb_000056_220 Hb_000056_220 Hb_000364_200--Hb_000056_220 Hb_002016_020--Hb_001369_620 Hb_135811_040 Hb_135811_040 Hb_002016_020--Hb_135811_040 Hb_000032_560 Hb_000032_560 Hb_002016_020--Hb_000032_560 Hb_002016_020--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_002016_020--Hb_000580_070 Hb_014834_020--Hb_080147_060 Hb_014834_020--Hb_000589_210 Hb_014834_020--Hb_001959_030 Hb_000041_290 Hb_000041_290 Hb_014834_020--Hb_000041_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.482888 0.504193 1.88462 3.42929 0.433392 0.270842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114623 0.0225451 0 11.103 0.0946148

CAGE analysis