Hb_011218_010

Information

Type -
Description -
Location Contig11218: 6479-12448
Sequence    

Annotation

kegg
ID rcu:RCOM_1439710
description Indole-3-acetic acid-amido synthetase GH3.17, putative
nr
ID XP_012082724.1
description PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
swissprot
ID O82243
description Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1
trembl
ID B9T0V7
description Indole-3-acetic acid-amido synthetase GH3.17, putative OS=Ricinus communis GN=RCOM_1439710 PE=4 SV=1
Gene Ontology
ID GO:0009941
description indole-3-acetic acid-amido synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03666: 9854-12660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_010 0.0 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
2 Hb_004102_180 0.0567597865 - - zinc finger family protein [Populus trichocarpa]
3 Hb_069384_010 0.0568764939 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
4 Hb_007292_060 0.0727867752 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
5 Hb_000175_600 0.0791043021 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
6 Hb_000964_120 0.0799598 - - DNA-damage-inducible protein f, putative [Ricinus communis]
7 Hb_002326_090 0.0858476462 - - amino acid transporter, putative [Ricinus communis]
8 Hb_006603_010 0.0887712923 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
9 Hb_007290_010 0.0906097978 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002925_040 0.0940216049 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
11 Hb_007292_020 0.0944380398 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
12 Hb_003197_050 0.0950053304 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
13 Hb_136944_010 0.0960799662 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
14 Hb_000152_630 0.100221554 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
15 Hb_000230_220 0.100933803 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000155_030 0.1011368599 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
17 Hb_116349_080 0.1013999626 - - Nectarin-1 precursor, putative [Ricinus communis]
18 Hb_025557_090 0.1018995674 - - hypothetical protein glysoja_034865 [Glycine soja]
19 Hb_001006_300 0.1059308659 - - lipid binding protein, putative [Ricinus communis]
20 Hb_002232_340 0.1067791137 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_011218_010 Hb_011218_010 Hb_004102_180 Hb_004102_180 Hb_011218_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_011218_010--Hb_069384_010 Hb_007292_060 Hb_007292_060 Hb_011218_010--Hb_007292_060 Hb_000175_600 Hb_000175_600 Hb_011218_010--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_011218_010--Hb_000964_120 Hb_002326_090 Hb_002326_090 Hb_011218_010--Hb_002326_090 Hb_004102_180--Hb_069384_010 Hb_004102_180--Hb_000175_600 Hb_004102_180--Hb_007292_060 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_004102_180--Hb_002326_090 Hb_000186_090 Hb_000186_090 Hb_069384_010--Hb_000186_090 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_002326_090 Hb_090210_010 Hb_090210_010 Hb_007292_060--Hb_090210_010 Hb_007292_060--Hb_000175_600 Hb_000175_600--Hb_002326_090 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_000964_120 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_000964_120--Hb_090210_010 Hb_002326_090--Hb_090210_010 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.324609 0.864394 7.31118 0.0101401 0.0186211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0343236 0.0504401 0.306004

CAGE analysis