Hb_011218_020

Information

Type -
Description -
Location Contig11218: 22695-23812
Sequence    

Annotation

kegg
ID rcu:RCOM_1439690
description hypothetical protein
nr
ID XP_002531874.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P22242
description Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1
trembl
ID B9T0V5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03667: 22570-24132
cDNA
(Sanger)
(ID:Location)		 011_A11.ab1: 23057-24039

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006332_030 0.04161749 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
3 Hb_028995_020 0.0486609832 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
4 Hb_017959_020 0.0594697201 - - hypothetical protein POPTR_0011s03440g [Populus trichocarpa]
5 Hb_000563_110 0.0599499534 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
6 Hb_001652_090 0.0613478612 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004117_240 0.0657944413 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
8 Hb_000175_110 0.0724477674 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
9 Hb_008642_020 0.0726131587 - - sterol desaturase, putative [Ricinus communis]
10 Hb_006485_020 0.0737652326 - - hypothetical protein JCGZ_15092 [Jatropha curcas]
11 Hb_000155_280 0.0772101188 - - PREDICTED: GDSL esterase/lipase At5g45950 [Jatropha curcas]
12 Hb_000005_390 0.077576014 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
13 Hb_011859_010 0.0782616109 - - hypothetical protein VITISV_027923 [Vitis vinifera]
14 Hb_005170_050 0.0800867725 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
15 Hb_012368_040 0.0820816102 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007558_060 0.0838318102 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
17 Hb_003464_040 0.0874988656 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_001564_100 0.0891714511 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
19 Hb_000084_230 0.09271833 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
20 Hb_001519_080 0.0956612765 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]

Gene co-expression network

sample Hb_011218_020 Hb_011218_020 Hb_006332_030 Hb_006332_030 Hb_011218_020--Hb_006332_030 Hb_028995_020 Hb_028995_020 Hb_011218_020--Hb_028995_020 Hb_017959_020 Hb_017959_020 Hb_011218_020--Hb_017959_020 Hb_000563_110 Hb_000563_110 Hb_011218_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_011218_020--Hb_001652_090 Hb_004117_240 Hb_004117_240 Hb_011218_020--Hb_004117_240 Hb_006332_030--Hb_028995_020 Hb_011859_010 Hb_011859_010 Hb_006332_030--Hb_011859_010 Hb_012368_040 Hb_012368_040 Hb_006332_030--Hb_012368_040 Hb_003464_040 Hb_003464_040 Hb_006332_030--Hb_003464_040 Hb_006332_030--Hb_000563_110 Hb_000175_110 Hb_000175_110 Hb_028995_020--Hb_000175_110 Hb_028995_020--Hb_000563_110 Hb_028995_020--Hb_001652_090 Hb_028995_020--Hb_012368_040 Hb_006485_020 Hb_006485_020 Hb_017959_020--Hb_006485_020 Hb_000155_280 Hb_000155_280 Hb_017959_020--Hb_000155_280 Hb_002026_040 Hb_002026_040 Hb_017959_020--Hb_002026_040 Hb_005170_050 Hb_005170_050 Hb_017959_020--Hb_005170_050 Hb_002376_020 Hb_002376_020 Hb_017959_020--Hb_002376_020 Hb_000563_110--Hb_001652_090 Hb_008642_020 Hb_008642_020 Hb_000563_110--Hb_008642_020 Hb_000563_110--Hb_000175_110 Hb_000005_390 Hb_000005_390 Hb_000563_110--Hb_000005_390 Hb_002045_020 Hb_002045_020 Hb_000563_110--Hb_002045_020 Hb_000563_110--Hb_012368_040 Hb_001652_090--Hb_000005_390 Hb_001652_090--Hb_012368_040 Hb_001652_090--Hb_008642_020 Hb_001652_090--Hb_002045_020 Hb_000691_060 Hb_000691_060 Hb_004117_240--Hb_000691_060 Hb_000175_160 Hb_000175_160 Hb_004117_240--Hb_000175_160 Hb_004117_240--Hb_000155_280 Hb_004117_240--Hb_017959_020 Hb_004117_070 Hb_004117_070 Hb_004117_240--Hb_004117_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.680782 244.286 41.2273 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.613451 6.81897

CAGE analysis