Hb_011218_040

Information

Type -
Description -
Location Contig11218: 32524-35936
Sequence    

Annotation

kegg
ID rcu:RCOM_1439680
description methylenetetrahydrofolate dehydrogenase, putative (EC:3.5.4.9)
nr
ID XP_002531873.1
description methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9LHH7
description Bifunctional protein FolD 2 OS=Arabidopsis thaliana GN=FOLD2 PE=2 SV=1
trembl
ID B9T0V4
description Methylenetetrahydrofolate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1439680 PE=3 SV=1
Gene Ontology
ID GO:0005829
description bifunctional protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03669: 32555-42568 , PASA_asmbl_03670: 33776-42568 , PASA_asmbl_03671: 32513-36086
cDNA
(Sanger)
(ID:Location)		 043_N19.ab1: 32972-35201 , 045_E01.ab1: 33836-42568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_040 0.0 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
2 Hb_000629_010 0.0649061313 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
3 Hb_004355_020 0.0657505145 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_000260_270 0.0695144934 - - zinc finger protein, putative [Ricinus communis]
5 Hb_005064_060 0.0751663002 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_010931_120 0.0786599649 - - myosin heavy chain-related family protein [Populus trichocarpa]
7 Hb_000123_210 0.078780801 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
8 Hb_004577_020 0.080301331 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
9 Hb_000244_220 0.082637905 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_011671_430 0.0827361821 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
11 Hb_000856_310 0.0831390483 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_006788_020 0.0833563033 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
13 Hb_005731_130 0.0836880612 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
14 Hb_000859_060 0.0841843467 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
15 Hb_003158_010 0.086353015 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
16 Hb_004837_040 0.086379009 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
17 Hb_010417_080 0.0866936073 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
18 Hb_000556_160 0.0873540516 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_001790_020 0.0876002546 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
20 Hb_000225_040 0.0876386444 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]

Gene co-expression network

sample Hb_011218_040 Hb_011218_040 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_000629_010--Hb_004355_020 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_000395_190 Hb_000395_190 Hb_000260_270--Hb_000395_190 Hb_005731_130 Hb_005731_130 Hb_000260_270--Hb_005731_130 Hb_004994_220 Hb_004994_220 Hb_000260_270--Hb_004994_220 Hb_000329_470 Hb_000329_470 Hb_000260_270--Hb_000329_470 Hb_002631_060 Hb_002631_060 Hb_000260_270--Hb_002631_060 Hb_004577_020 Hb_004577_020 Hb_005064_060--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_005064_060--Hb_010417_080 Hb_005064_060--Hb_000260_270 Hb_035398_020 Hb_035398_020 Hb_005064_060--Hb_035398_020 Hb_017224_030 Hb_017224_030 Hb_005064_060--Hb_017224_030 Hb_004055_030 Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4239 33.0672 13.5337 18.2052 29.6562 32.3607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.2206 28.4755 31.58 37.0054 12.1026

CAGE analysis