Hb_011218_070

Information

Type -
Description -
Location Contig11218: 63430-64530
Sequence    

Annotation

kegg
ID cic:CICLE_v10020732mg
description hypothetical protein
nr
ID XP_012082717.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067K793
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_001049_030 0.104429201 - - catalytic, putative [Ricinus communis]
3 Hb_000077_230 0.1158479767 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
4 Hb_003216_080 0.1201910238 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
5 Hb_000465_480 0.1209972449 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
6 Hb_001930_010 0.1215262395 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
7 Hb_000264_320 0.1243351467 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
8 Hb_000313_060 0.1253693119 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_124315_020 0.1256225663 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001247_070 0.1264464984 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
11 Hb_000174_220 0.1267156412 - - cohesin subunit rad21, putative [Ricinus communis]
12 Hb_006573_200 0.1272786849 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
13 Hb_010578_060 0.1277633284 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
14 Hb_000009_210 0.1298473122 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
15 Hb_002235_300 0.1302632582 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
16 Hb_007904_080 0.131740763 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
17 Hb_000878_180 0.1318174681 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
18 Hb_001472_090 0.1339391631 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_008775_040 0.1356388917 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
20 Hb_000062_250 0.1358443251 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]

Gene co-expression network

sample Hb_011218_070 Hb_011218_070 Hb_001049_030 Hb_001049_030 Hb_011218_070--Hb_001049_030 Hb_000077_230 Hb_000077_230 Hb_011218_070--Hb_000077_230 Hb_003216_080 Hb_003216_080 Hb_011218_070--Hb_003216_080 Hb_000465_480 Hb_000465_480 Hb_011218_070--Hb_000465_480 Hb_001930_010 Hb_001930_010 Hb_011218_070--Hb_001930_010 Hb_000264_320 Hb_000264_320 Hb_011218_070--Hb_000264_320 Hb_006573_200 Hb_006573_200 Hb_001049_030--Hb_006573_200 Hb_001049_030--Hb_000077_230 Hb_012395_220 Hb_012395_220 Hb_001049_030--Hb_012395_220 Hb_042038_020 Hb_042038_020 Hb_001049_030--Hb_042038_020 Hb_000953_010 Hb_000953_010 Hb_001049_030--Hb_000953_010 Hb_000062_250 Hb_000062_250 Hb_000077_230--Hb_000062_250 Hb_000077_070 Hb_000077_070 Hb_000077_230--Hb_000077_070 Hb_000025_360 Hb_000025_360 Hb_000077_230--Hb_000025_360 Hb_000107_500 Hb_000107_500 Hb_000077_230--Hb_000107_500 Hb_000031_050 Hb_000031_050 Hb_000077_230--Hb_000031_050 Hb_000174_220 Hb_000174_220 Hb_000077_230--Hb_000174_220 Hb_003938_080 Hb_003938_080 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_003216_080--Hb_000107_500 Hb_003216_080--Hb_001930_010 Hb_000920_250 Hb_000920_250 Hb_000465_480--Hb_000920_250 Hb_001902_060 Hb_001902_060 Hb_000465_480--Hb_001902_060 Hb_001059_100 Hb_001059_100 Hb_000465_480--Hb_001059_100 Hb_010578_060 Hb_010578_060 Hb_000465_480--Hb_010578_060 Hb_000465_170 Hb_000465_170 Hb_000465_480--Hb_000465_170 Hb_007676_100 Hb_007676_100 Hb_000465_480--Hb_007676_100 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_000390_070 Hb_000390_070 Hb_001930_010--Hb_000390_070 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060 Hb_008775_040 Hb_008775_040 Hb_000264_320--Hb_008775_040 Hb_002636_100 Hb_002636_100 Hb_000264_320--Hb_002636_100 Hb_003020_050 Hb_003020_050 Hb_000264_320--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_000264_320--Hb_000140_230 Hb_000175_220 Hb_000175_220 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80483 6.11979 2.1038 1.27662 3.70471 6.06428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.810249 1.73491 5.1135 1.86119 2.33287

CAGE analysis