Hb_011218_090

Information

Type -
Description -
Location Contig11218: 75577-81257
Sequence    

Annotation

kegg
ID rcu:RCOM_1439510
description WD-repeat protein, putative
nr
ID XP_012082714.1
description PREDICTED: autophagy-related protein 18a [Jatropha curcas]
swissprot
ID Q93VB2
description Autophagy-related protein 18a OS=Arabidopsis thaliana GN=ATG18A PE=1 SV=1
trembl
ID A0A067JW43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13893 PE=4 SV=1
Gene Ontology
ID GO:0005829
description autophagy-related protein 18a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03677: 75678-81043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_090 0.0 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
2 Hb_000359_060 0.0526469029 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
3 Hb_000890_150 0.0623543839 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
4 Hb_000049_210 0.0693896999 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_004157_050 0.0695743644 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
6 Hb_149985_010 0.0714795594 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
7 Hb_000029_140 0.0716770295 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
8 Hb_003058_120 0.0726928795 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
9 Hb_005634_010 0.0748469528 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_002471_090 0.0754625194 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
11 Hb_000173_280 0.0771605792 - - Speckle-type POZ protein, putative [Ricinus communis]
12 Hb_168978_010 0.0775521099 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
13 Hb_000392_420 0.0777896949 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
14 Hb_007218_120 0.0797476911 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
15 Hb_000778_010 0.080024831 - - hypothetical protein [Bacillus subtilis]
16 Hb_002119_130 0.0802976424 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
17 Hb_000220_100 0.08040401 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
18 Hb_005588_060 0.0805489933 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
19 Hb_000460_030 0.0819612725 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
20 Hb_000521_240 0.08219559 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011218_090 Hb_011218_090 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_000049_210 Hb_000049_210 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_000049_210--Hb_149985_010 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_149985_010--Hb_005054_110 Hb_000029_140--Hb_149985_010 Hb_000120_080 Hb_000120_080 Hb_000029_140--Hb_000120_080 Hb_000012_310 Hb_000012_310 Hb_000029_140--Hb_000012_310 Hb_000029_140--Hb_003058_120 Hb_005634_010 Hb_005634_010 Hb_000029_140--Hb_005634_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0378 23.4363 20.338 30.1659 13.5503 12.0557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8852 24.1439 27.7084 28.4342 19.5506

CAGE analysis