Hb_011224_040

Information

Type -
Description -
Location Contig11224: 22773-25160
Sequence    

Annotation

kegg
ID rcu:RCOM_0523270
description Neighbor of COX4, putative
nr
ID XP_012071066.1
description PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
swissprot
ID Q9FG71
description ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1
trembl
ID A0A067KT59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01069 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_040 0.0 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
2 Hb_000500_210 0.1484417309 - - -
3 Hb_000046_200 0.164584111 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
4 Hb_002526_020 0.1807691303 - - -
5 Hb_000434_020 0.1993156964 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
6 Hb_004429_110 0.2023807344 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000975_270 0.2078183118 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
8 Hb_008887_040 0.2087914703 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
9 Hb_000454_180 0.2101133578 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
10 Hb_003376_380 0.2124635494 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
11 Hb_004755_030 0.2191889434 - - EG964 [Manihot glaziovii]
12 Hb_001842_120 0.2242390695 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_000617_110 0.2290532949 - - translationally controlled tumor protein [Hevea brasiliensis]
14 Hb_000270_610 0.2304670045 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
15 Hb_001140_240 0.2345997099 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_002759_110 0.2361954318 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
17 Hb_186158_010 0.2362017602 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001488_400 0.2368257504 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
19 Hb_000915_100 0.2369709489 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_003057_020 0.239005182 - - 40S ribosomal protein S23, putative [Ricinus communis]

Gene co-expression network

sample Hb_011224_040 Hb_011224_040 Hb_000500_210 Hb_000500_210 Hb_011224_040--Hb_000500_210 Hb_000046_200 Hb_000046_200 Hb_011224_040--Hb_000046_200 Hb_002526_020 Hb_002526_020 Hb_011224_040--Hb_002526_020 Hb_000434_020 Hb_000434_020 Hb_011224_040--Hb_000434_020 Hb_004429_110 Hb_004429_110 Hb_011224_040--Hb_004429_110 Hb_000975_270 Hb_000975_270 Hb_011224_040--Hb_000975_270 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_000915_100 Hb_000915_100 Hb_000046_200--Hb_000915_100 Hb_001842_120 Hb_001842_120 Hb_000046_200--Hb_001842_120 Hb_000046_200--Hb_000500_210 Hb_000046_200--Hb_000975_270 Hb_001425_110 Hb_001425_110 Hb_000046_200--Hb_001425_110 Hb_003784_050 Hb_003784_050 Hb_002526_020--Hb_003784_050 Hb_100180_010 Hb_100180_010 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_002526_020--Hb_000500_210 Hb_002526_020--Hb_000434_020 Hb_000434_020--Hb_000500_210 Hb_065866_010 Hb_065866_010 Hb_000434_020--Hb_065866_010 Hb_002759_110 Hb_002759_110 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_032974_010 Hb_032974_010 Hb_000975_270--Hb_032974_010 Hb_005714_050 Hb_005714_050 Hb_000975_270--Hb_005714_050 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_069022_010 Hb_069022_010 Hb_000975_270--Hb_069022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127698 0.0721448 0.789489 0.690554 0.125643 0.617628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34593 7.84042 0.136065 0.413492 0.451749

CAGE analysis