Hb_011224_080

Information

Type -
Description -
Location Contig11224: 38278-41911
Sequence    

Annotation

kegg
ID rcu:RCOM_0523310
description hypothetical protein
nr
ID XP_012071071.1
description PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03691: 38803-38920 , PASA_asmbl_03692: 39021-39827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_080 0.0 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
2 Hb_006693_030 0.071672694 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
3 Hb_000029_030 0.0800850826 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
4 Hb_002368_050 0.080241906 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002659_140 0.0827013439 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
6 Hb_168918_020 0.0845860034 - - pectin acetylesterase, putative [Ricinus communis]
7 Hb_000556_080 0.0848634512 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
8 Hb_007760_030 0.0866701151 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
9 Hb_000172_370 0.087238464 - - -
10 Hb_010638_020 0.0874735443 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
11 Hb_001842_070 0.0885555652 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
12 Hb_118419_020 0.0892524541 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
13 Hb_000365_360 0.089376916 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_001135_160 0.0896741551 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
15 Hb_001776_110 0.0909250611 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
16 Hb_060809_010 0.0915091853 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
17 Hb_007508_070 0.091745024 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_001439_120 0.0922785491 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004662_030 0.0960564349 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
20 Hb_002942_020 0.0969852892 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011224_080 Hb_011224_080 Hb_006693_030 Hb_006693_030 Hb_011224_080--Hb_006693_030 Hb_000029_030 Hb_000029_030 Hb_011224_080--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_011224_080--Hb_002368_050 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080 Hb_000956_010 Hb_000956_010 Hb_006693_030--Hb_000956_010 Hb_006693_030--Hb_002368_050 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_000029_030--Hb_002368_050 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_002368_050--Hb_000956_010 Hb_000025_200 Hb_000025_200 Hb_002368_050--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_002368_050--Hb_007908_020 Hb_004970_200 Hb_004970_200 Hb_002659_140--Hb_004970_200 Hb_010174_130 Hb_010174_130 Hb_002659_140--Hb_010174_130 Hb_001001_160 Hb_001001_160 Hb_002659_140--Hb_001001_160 Hb_002659_140--Hb_000025_200 Hb_002111_050 Hb_002111_050 Hb_002659_140--Hb_002111_050 Hb_012340_030 Hb_012340_030 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_182026_020 Hb_182026_020 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_001439_120 Hb_001439_120 Hb_000556_080--Hb_001439_120 Hb_010638_020 Hb_010638_020 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13013 0.549397 0.526126 0.60901 3.90561 3.68789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45043 3.04223 3.43488 0.774869 0.980851

CAGE analysis