Hb_011224_100

Information

Type -
Description -
Location Contig11224: 47796-51163
Sequence    

Annotation

kegg
ID rcu:RCOM_0523330
description hypothetical protein
nr
ID XP_002522798.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9H330
description Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2
trembl
ID B9S9X9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0523330 PE=4 SV=1
Gene Ontology
ID GO:0009507
description transmembrane protein 245

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03693: 47696-51005 , PASA_asmbl_03694: 51015-51127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011606_020 0.1174020211 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
3 Hb_002174_040 0.1196842935 - - DNAJ heat shock family protein [Theobroma cacao]
4 Hb_000116_130 0.1200750076 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
5 Hb_021495_020 0.1260684758 - - chitinase, putative [Ricinus communis]
6 Hb_043792_040 0.1298736863 - - hypothetical protein, partial [Rosa rugosa]
7 Hb_012573_050 0.1309052463 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
8 Hb_011139_040 0.1377847474 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
9 Hb_003453_050 0.1393088516 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
10 Hb_000230_290 0.1401678482 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_001946_380 0.1405819526 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
12 Hb_003086_080 0.1454963747 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
13 Hb_001663_040 0.1476388572 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
14 Hb_000244_180 0.1485523302 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006816_470 0.1491584413 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
16 Hb_000368_090 0.1502924382 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
17 Hb_121089_040 0.1515426854 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
18 Hb_000062_540 0.1525144449 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001916_090 0.1525692698 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
20 Hb_171215_010 0.1540500465 - - vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011224_100 Hb_011224_100 Hb_011606_020 Hb_011606_020 Hb_011224_100--Hb_011606_020 Hb_002174_040 Hb_002174_040 Hb_011224_100--Hb_002174_040 Hb_000116_130 Hb_000116_130 Hb_011224_100--Hb_000116_130 Hb_021495_020 Hb_021495_020 Hb_011224_100--Hb_021495_020 Hb_043792_040 Hb_043792_040 Hb_011224_100--Hb_043792_040 Hb_012573_050 Hb_012573_050 Hb_011224_100--Hb_012573_050 Hb_011606_020--Hb_000116_130 Hb_000107_430 Hb_000107_430 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_002110_100 Hb_002110_100 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040 Hb_031527_110 Hb_031527_110 Hb_002174_040--Hb_031527_110 Hb_002174_040--Hb_012573_050 Hb_000181_350 Hb_000181_350 Hb_002174_040--Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_002174_040--Hb_001663_040 Hb_002184_090 Hb_002184_090 Hb_002174_040--Hb_002184_090 Hb_000116_130--Hb_012573_050 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000116_130--Hb_000107_430 Hb_000116_130--Hb_001663_040 Hb_000062_400 Hb_000062_400 Hb_021495_020--Hb_000062_400 Hb_001491_030 Hb_001491_030 Hb_021495_020--Hb_001491_030 Hb_009020_040 Hb_009020_040 Hb_021495_020--Hb_009020_040 Hb_011926_040 Hb_011926_040 Hb_021495_020--Hb_011926_040 Hb_003746_010 Hb_003746_010 Hb_021495_020--Hb_003746_010 Hb_000062_540 Hb_000062_540 Hb_043792_040--Hb_000062_540 Hb_007416_210 Hb_007416_210 Hb_043792_040--Hb_007416_210 Hb_001936_130 Hb_001936_130 Hb_043792_040--Hb_001936_130 Hb_000409_030 Hb_000409_030 Hb_043792_040--Hb_000409_030 Hb_002289_060 Hb_002289_060 Hb_043792_040--Hb_002289_060 Hb_019181_040 Hb_019181_040 Hb_043792_040--Hb_019181_040 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66523 2.84925 9.09795 18.8741 4.51343 5.98566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2453 5.92045 17.1761 4.42589 21.0164

CAGE analysis