Hb_011236_010

Information

Type -
Description -
Location Contig11236: 12859-16483
Sequence    

Annotation

kegg
ID rcu:RCOM_0003370
description hypothetical protein
nr
ID KDP30224.1
description hypothetical protein JCGZ_17006 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17006 PE=4 SV=1
Gene Ontology
ID GO:0008270
description hypothetical protein JCGZ_17006

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03784: 15770-16408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011236_010 0.0 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
2 Hb_004223_040 0.0748124645 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
3 Hb_003929_150 0.0894012892 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
4 Hb_000699_090 0.08979979 - - cyclophilin, putative [Ricinus communis]
5 Hb_006478_160 0.0917748921 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
6 Hb_001718_030 0.0946009034 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
7 Hb_000676_310 0.1003802661 - - BnaC09g40680D [Brassica napus]
8 Hb_002235_080 0.1046085444 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
9 Hb_008921_020 0.1062593121 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
10 Hb_001431_080 0.1064995469 - - 40S ribosomal protein S11, putative [Ricinus communis]
11 Hb_008772_010 0.1066152038 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001726_040 0.1071213697 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
13 Hb_004453_020 0.1079755981 - - unnamed protein product [Vitis vinifera]
14 Hb_004057_010 0.1098442252 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
15 Hb_000788_010 0.1099805255 - - 40S ribosomal protein S16A [Hevea brasiliensis]
16 Hb_000035_370 0.1107174806 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006198_070 0.1114678187 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
18 Hb_001188_030 0.1119351258 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
19 Hb_003633_060 0.1127089924 - - translationally controlled tumor protein [Hevea brasiliensis]
20 Hb_007245_080 0.1128833898 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]

Gene co-expression network

sample Hb_011236_010 Hb_011236_010 Hb_004223_040 Hb_004223_040 Hb_011236_010--Hb_004223_040 Hb_003929_150 Hb_003929_150 Hb_011236_010--Hb_003929_150 Hb_000699_090 Hb_000699_090 Hb_011236_010--Hb_000699_090 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_001718_030 Hb_001718_030 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_004223_040--Hb_000062_650 Hb_002235_080 Hb_002235_080 Hb_003929_150--Hb_002235_080 Hb_003929_150--Hb_006478_160 Hb_000155_160 Hb_000155_160 Hb_003929_150--Hb_000155_160 Hb_007245_080 Hb_007245_080 Hb_003929_150--Hb_007245_080 Hb_003929_150--Hb_001718_030 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_006478_160--Hb_008921_020 Hb_001188_030 Hb_001188_030 Hb_001718_030--Hb_001188_030 Hb_006355_040 Hb_006355_040 Hb_001718_030--Hb_006355_040 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001431_080 Hb_001431_080 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_000676_310--Hb_001718_030 Hb_000676_310--Hb_001431_080 Hb_000676_310--Hb_001188_030 Hb_000676_310--Hb_006355_040 Hb_132840_140 Hb_132840_140 Hb_000676_310--Hb_132840_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86367 4.65273 5.34599 6.88124 2.47026 4.78444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79094 22.609 7.87522 3.64643 3.77285

CAGE analysis