Hb_011242_030

Information

Type -
Description -
Location Contig11242: 27293-31321
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_030 0.0 - - -
2 Hb_002685_180 0.1909087929 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_019033_010 0.1954930634 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
4 Hb_000453_210 0.2153594393 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
5 Hb_001437_050 0.218981298 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
6 Hb_000275_130 0.2212174368 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
7 Hb_001495_060 0.2233439501 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
8 Hb_000179_150 0.2261059472 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
9 Hb_002233_110 0.2289019798 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
10 Hb_107504_010 0.231157129 - - -
11 Hb_148909_020 0.2354140141 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001936_140 0.2369937497 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
13 Hb_012799_020 0.2387967562 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_001143_010 0.2464534512 - - -
15 Hb_003592_070 0.2476444793 - - -
16 Hb_002768_020 0.2482052687 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
17 Hb_000567_280 0.2513186138 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
18 Hb_000922_170 0.2535663149 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
19 Hb_054074_010 0.253822791 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
20 Hb_084889_010 0.2601670562 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]

Gene co-expression network

sample Hb_011242_030 Hb_011242_030 Hb_002685_180 Hb_002685_180 Hb_011242_030--Hb_002685_180 Hb_019033_010 Hb_019033_010 Hb_011242_030--Hb_019033_010 Hb_000453_210 Hb_000453_210 Hb_011242_030--Hb_000453_210 Hb_001437_050 Hb_001437_050 Hb_011242_030--Hb_001437_050 Hb_000275_130 Hb_000275_130 Hb_011242_030--Hb_000275_130 Hb_001495_060 Hb_001495_060 Hb_011242_030--Hb_001495_060 Hb_002685_180--Hb_000453_210 Hb_002685_180--Hb_001495_060 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_002685_180--Hb_019033_010 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_000453_210--Hb_001495_060 Hb_008667_050 Hb_008667_050 Hb_000453_210--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000453_210--Hb_003209_030 Hb_001047_140 Hb_001047_140 Hb_000453_210--Hb_001047_140 Hb_002233_110 Hb_002233_110 Hb_001437_050--Hb_002233_110 Hb_000091_100 Hb_000091_100 Hb_001437_050--Hb_000091_100 Hb_001437_050--Hb_004502_080 Hb_000567_280 Hb_000567_280 Hb_001437_050--Hb_000567_280 Hb_023732_060 Hb_023732_060 Hb_000275_130--Hb_023732_060 Hb_054074_010 Hb_054074_010 Hb_000275_130--Hb_054074_010 Hb_004421_020 Hb_004421_020 Hb_000275_130--Hb_004421_020 Hb_008699_020 Hb_008699_020 Hb_000275_130--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000275_130--Hb_000096_130 Hb_023386_010 Hb_023386_010 Hb_000275_130--Hb_023386_010 Hb_000529_240 Hb_000529_240 Hb_001495_060--Hb_000529_240 Hb_001495_060--Hb_003209_030 Hb_001495_060--Hb_001143_010 Hb_001495_060--Hb_001047_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90132 2.17579 1.10352 0.371763 0.474974 1.16271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0021 7.50171 0.462827 1.0307 1.02316

CAGE analysis