Hb_011249_040

Information

Type -
Description -
Location Contig11249: 44383-53568
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02420g
description hypothetical protein
nr
ID XP_011036970.1
description PREDICTED: acetylajmalan esterase-like [Populus euphratica]
swissprot
ID Q38894
description GDSL esterase/lipase At1g28670 OS=Arabidopsis thaliana GN=At1g28670 PE=2 SV=1
trembl
ID U5G9P4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03852: 51666-51780 , PASA_asmbl_03853: 53303-53417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_040 0.0 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
2 Hb_168925_010 0.2527057084 - - -
3 Hb_039229_010 0.2594996216 - - -
4 Hb_080749_010 0.2661865038 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
5 Hb_000264_220 0.2721282289 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
6 Hb_012338_020 0.2747794259 - - -
7 Hb_002240_040 0.291850974 - - -
8 Hb_003055_150 0.2918882921 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_008790_050 0.2947675435 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000226_100 0.2982061629 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_074238_010 0.3002436893 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
12 Hb_005531_010 0.3057939963 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
13 Hb_007975_040 0.3067435228 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
14 Hb_033835_020 0.3098289455 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_008505_020 0.3104170015 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_007547_020 0.3150426226 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
17 Hb_152362_010 0.3187976753 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
18 Hb_001741_130 0.3214072987 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
19 Hb_163268_010 0.321505189 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
20 Hb_004316_090 0.3255649371 - - hypothetical protein JCGZ_21197 [Jatropha curcas]

Gene co-expression network

sample Hb_011249_040 Hb_011249_040 Hb_168925_010 Hb_168925_010 Hb_011249_040--Hb_168925_010 Hb_039229_010 Hb_039229_010 Hb_011249_040--Hb_039229_010 Hb_080749_010 Hb_080749_010 Hb_011249_040--Hb_080749_010 Hb_000264_220 Hb_000264_220 Hb_011249_040--Hb_000264_220 Hb_012338_020 Hb_012338_020 Hb_011249_040--Hb_012338_020 Hb_002240_040 Hb_002240_040 Hb_011249_040--Hb_002240_040 Hb_168925_010--Hb_039229_010 Hb_168925_010--Hb_002240_040 Hb_005531_010 Hb_005531_010 Hb_168925_010--Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_168925_010--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_168925_010--Hb_008505_020 Hb_001741_130 Hb_001741_130 Hb_168925_010--Hb_001741_130 Hb_039229_010--Hb_002240_040 Hb_039229_010--Hb_005531_010 Hb_039229_010--Hb_033835_020 Hb_039229_010--Hb_008505_020 Hb_039229_010--Hb_001741_130 Hb_003020_170 Hb_003020_170 Hb_080749_010--Hb_003020_170 Hb_003055_150 Hb_003055_150 Hb_080749_010--Hb_003055_150 Hb_001477_150 Hb_001477_150 Hb_080749_010--Hb_001477_150 Hb_080749_010--Hb_012338_020 Hb_000321_130 Hb_000321_130 Hb_080749_010--Hb_000321_130 Hb_024247_020 Hb_024247_020 Hb_000264_220--Hb_024247_020 Hb_011356_020 Hb_011356_020 Hb_000264_220--Hb_011356_020 Hb_000781_050 Hb_000781_050 Hb_000264_220--Hb_000781_050 Hb_002498_130 Hb_002498_130 Hb_000264_220--Hb_002498_130 Hb_001789_170 Hb_001789_170 Hb_000264_220--Hb_001789_170 Hb_152362_010 Hb_152362_010 Hb_000264_220--Hb_152362_010 Hb_007547_020 Hb_007547_020 Hb_012338_020--Hb_007547_020 Hb_004324_160 Hb_004324_160 Hb_012338_020--Hb_004324_160 Hb_012338_020--Hb_000321_130 Hb_012338_020--Hb_008505_020 Hb_012338_020--Hb_033835_020 Hb_012338_020--Hb_001741_130 Hb_002240_040--Hb_005531_010 Hb_002240_040--Hb_033835_020 Hb_002240_040--Hb_008505_020 Hb_002240_040--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_002240_040--Hb_163268_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0134633 0.0140253 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0306901 0.171557 0 0

CAGE analysis