Hb_011249_050

Information

Type -
Description -
Location Contig11249: 52284-52963
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03854: 53516-76854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_050 0.0 - - -
2 Hb_068804_040 0.1852988614 - - -
3 Hb_057098_010 0.218792761 - - -
4 Hb_000098_290 0.2456816407 - - -
5 Hb_058722_010 0.2591518367 - - -
6 Hb_000679_060 0.2694720793 - - ADP,ATP carrier protein, putative [Ricinus communis]
7 Hb_011861_060 0.2780397521 - - -
8 Hb_001221_560 0.2808045243 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
9 Hb_003322_010 0.28451869 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_003813_160 0.2859686507 - - -
11 Hb_003198_030 0.3048919842 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
12 Hb_011431_010 0.3060905724 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_090963_010 0.3099091631 - - -
14 Hb_037063_010 0.3115536459 - - -
15 Hb_000218_030 0.3151659046 - - -
16 Hb_002542_040 0.3151761282 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
17 Hb_000321_160 0.3162600139 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
18 Hb_000915_160 0.3167399132 - - PREDICTED: histone H1 [Jatropha curcas]
19 Hb_000270_330 0.3177921843 - - ribosomal protein S6 kinase, putative [Ricinus communis]
20 Hb_002546_020 0.3186408605 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]

Gene co-expression network

sample Hb_011249_050 Hb_011249_050 Hb_068804_040 Hb_068804_040 Hb_011249_050--Hb_068804_040 Hb_057098_010 Hb_057098_010 Hb_011249_050--Hb_057098_010 Hb_000098_290 Hb_000098_290 Hb_011249_050--Hb_000098_290 Hb_058722_010 Hb_058722_010 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_068804_040--Hb_058722_010 Hb_068804_040--Hb_057098_010 Hb_003416_050 Hb_003416_050 Hb_068804_040--Hb_003416_050 Hb_002546_020 Hb_002546_020 Hb_068804_040--Hb_002546_020 Hb_068804_040--Hb_000098_290 Hb_037063_010 Hb_037063_010 Hb_057098_010--Hb_037063_010 Hb_001638_090 Hb_001638_090 Hb_057098_010--Hb_001638_090 Hb_005539_020 Hb_005539_020 Hb_057098_010--Hb_005539_020 Hb_057098_010--Hb_000098_290 Hb_000796_240 Hb_000796_240 Hb_057098_010--Hb_000796_240 Hb_000098_290--Hb_037063_010 Hb_000098_290--Hb_005539_020 Hb_002400_360 Hb_002400_360 Hb_000098_290--Hb_002400_360 Hb_010407_170 Hb_010407_170 Hb_000098_290--Hb_010407_170 Hb_000103_350 Hb_000103_350 Hb_058722_010--Hb_000103_350 Hb_080085_010 Hb_080085_010 Hb_058722_010--Hb_080085_010 Hb_003813_160 Hb_003813_160 Hb_058722_010--Hb_003813_160 Hb_058722_010--Hb_057098_010 Hb_002217_510 Hb_002217_510 Hb_000679_060--Hb_002217_510 Hb_002338_020 Hb_002338_020 Hb_000679_060--Hb_002338_020 Hb_000589_260 Hb_000589_260 Hb_000679_060--Hb_000589_260 Hb_007423_040 Hb_007423_040 Hb_000679_060--Hb_007423_040 Hb_017002_020 Hb_017002_020 Hb_000679_060--Hb_017002_020 Hb_000010_250 Hb_000010_250 Hb_000679_060--Hb_000010_250 Hb_000270_330 Hb_000270_330 Hb_011861_060--Hb_000270_330 Hb_000072_170 Hb_000072_170 Hb_011861_060--Hb_000072_170 Hb_035273_010 Hb_035273_010 Hb_011861_060--Hb_035273_010 Hb_002374_230 Hb_002374_230 Hb_011861_060--Hb_002374_230 Hb_001269_650 Hb_001269_650 Hb_011861_060--Hb_001269_650 Hb_000742_170 Hb_000742_170 Hb_011861_060--Hb_000742_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.300794 0.589621 0.318574 0 0.441458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.575863 0.678914 0 0.401367 0.440306

CAGE analysis